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Record Information

Version

5.0

Status

Detected but not Quantified

Creation Date

2021-09-11 17:04:25 UTC

Update Date

2021-09-26 23:12:18 UTC

HMDB ID

HMDB0256557

Secondary Accession Numbers

None

Metabolite Identification

Common Name

Pinacidil pyridine N-oxide

Description

Pinacidil pyridine N-oxide, also known as pinacidil N-oxide, belongs to the class of organic compounds known as dihydropyridines. Dihydropyridines are compounds containing a dihydropyridine moiety, which is a semi-saturated pyridine derivative with two double bonds. Based on a literature review a significant number of articles have been published on Pinacidil pyridine N-oxide. This compound has been identified in human blood as reported by (PMID: 31557052 ). Pinacidil pyridine n-oxide is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Pinacidil pyridine N-oxide is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0256557
     RDKit          3D
Pinacidil pyridine N-oxide
 38 38  0  0  0  0  0  0  0  0999 V2000
   -1.1940   -0.5856   -1.8707 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4138   -0.0130   -0.4908 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8956   -0.8915    0.5315 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.2235   -0.6772    1.1255 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9708    0.4562    0.7650 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.1884    0.4416    0.3512 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7686    1.6586    0.0399 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0677    1.6780   -0.4048 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7234    0.5100   -0.5195 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.0405    0.5498   -0.9723 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1758   -0.6828   -0.2216 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8748   -0.7499    0.2283 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6355   -1.6053    2.1138 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.1667   -1.1861    3.3333 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5867   -0.8389    4.3464 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8870    0.1927   -0.1956 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5508   -1.1684   -0.2957 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5098    1.1578   -1.1607 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9738    0.7606    1.2068 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8790   -0.1659   -2.6212 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1599   -0.3758   -2.2079 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3404   -1.6885   -1.8879 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8521    0.9431   -0.4175 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2166    2.5887    0.1414 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5443    2.6290   -0.6560 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1454    0.8239   -1.9452 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7109   -1.6015   -0.3184 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3979   -1.7036    0.4798 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5217   -2.6246    1.8842 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7961   -1.9959   -0.1692 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0187   -1.2984   -1.2777 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2481   -1.2723    0.5480 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4565    1.5410   -0.6984 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8452    1.9926   -1.3870 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8291    0.5809   -2.0519 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8753    0.2773    1.6755 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0509    0.5019    1.7920 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1831    1.8414    1.2076 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  3
  4  5  1  0
  5  6  2  3
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  1  0
  9 11  1  0
 11 12  2  0
  4 13  1  0
 13 14  1  0
 14 15  3  0
  2 16  1  0
 16 17  1  0
 16 18  1  0
 16 19  1  0
 12  6  1  0
  1 20  1  0
  1 21  1  0
  1 22  1  0
  2 23  1  0
  7 24  1  0
  8 25  1  0
 10 26  1  0
 11 27  1  0
 12 28  1  0
 13 29  1  0
 17 30  1  0
 17 31  1  0
 17 32  1  0
 18 33  1  0
 18 34  1  0
 18 35  1  0
 19 36  1  0
 19 37  1  0
 19 38  1  0
M  END


  Mrv1652309112119042D          

 19 19  0  0  0  0            999 V2000
   -1.4289    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5395    4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1105    4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    3.3000    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    2.0625    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    2.8875    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  3  6  1  0  0  0  0
  7  2  1  4  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  3  0  0  0  0
  8 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 13 18  1  0  0  0  0
 16 19  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0256557

> <DATABASE_NAME>
hmdb

> <SMILES>
CC(N=C(NC#N)N=C1C=CN(O)C=C1)C(C)(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C13H19N5O/c1-10(13(2,3)4)16-12(15-9-14)17-11-5-7-18(19)8-6-11/h5-8,10,19H,1-4H3,(H,15,16)

> <INCHI_KEY>
DQRXZTGBHIYUGA-UHFFFAOYSA-N

> <FORMULA>
C13H19N5O

> <MOLECULAR_WEIGHT>
261.329

> <EXACT_MASS>
261.158960252

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
38

> <JCHEM_AVERAGE_POLARIZABILITY>
28.12740276649197

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
N'-cyano-N''-(3,3-dimethylbutan-2-yl)-N-(1-hydroxy-1,4-dihydropyridin-4-ylidene)guanidine

> <ALOGPS_LOGP>
1.83

> <JCHEM_LOGP>
1.7643340466666657

> <ALOGPS_LOGS>
-3.26

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
18.604952089650123

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.860695666416657

> <JCHEM_PKA_STRONGEST_BASIC>
7.167883901814245

> <JCHEM_POLAR_SURFACE_AREA>
84.01

> <JCHEM_REFRACTIVITY>
75.05119999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.43e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
N'-cyano-N''-(3,3-dimethylbutan-2-yl)-N-(1-hydroxypyridin-4-ylidene)guanidine

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0256557
     RDKit          3D
Pinacidil pyridine N-oxide
 38 38  0  0  0  0  0  0  0  0999 V2000
   -1.1940   -0.5856   -1.8707 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4138   -0.0130   -0.4908 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8956   -0.8915    0.5315 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.2235   -0.6772    1.1255 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9708    0.4562    0.7650 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.1884    0.4416    0.3512 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7686    1.6586    0.0399 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0677    1.6780   -0.4048 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7234    0.5100   -0.5195 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.0405    0.5498   -0.9723 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1758   -0.6828   -0.2216 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8748   -0.7499    0.2283 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6355   -1.6053    2.1138 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.1667   -1.1861    3.3333 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5867   -0.8389    4.3464 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8870    0.1927   -0.1956 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5508   -1.1684   -0.2957 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5098    1.1578   -1.1607 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9738    0.7606    1.2068 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8790   -0.1659   -2.6212 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1599   -0.3758   -2.2079 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3404   -1.6885   -1.8879 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8521    0.9431   -0.4175 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2166    2.5887    0.1414 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5443    2.6290   -0.6560 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1454    0.8239   -1.9452 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7109   -1.6015   -0.3184 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3979   -1.7036    0.4798 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5217   -2.6246    1.8842 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7961   -1.9959   -0.1692 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0187   -1.2984   -1.2777 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2481   -1.2723    0.5480 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4565    1.5410   -0.6984 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8452    1.9926   -1.3870 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8291    0.5809   -2.0519 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8753    0.2773    1.6755 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0509    0.5019    1.7920 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1831    1.8414    1.2076 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  3
  4  5  1  0
  5  6  2  3
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  1  0
  9 11  1  0
 11 12  2  0
  4 13  1  0
 13 14  1  0
 14 15  3  0
  2 16  1  0
 16 17  1  0
 16 18  1  0
 16 19  1  0
 12  6  1  0
  1 20  1  0
  1 21  1  0
  1 22  1  0
  2 23  1  0
  7 24  1  0
  8 25  1  0
 10 26  1  0
 11 27  1  0
 12 28  1  0
 13 29  1  0
 17 30  1  0
 17 31  1  0
 17 32  1  0
 18 33  1  0
 18 34  1  0
 18 35  1  0
 19 36  1  0
 19 37  1  0
 19 38  1  0
M  END

HEADER    PROTEIN                                 11-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-21         0                                  
HETATM    1  C   UNK     0      -2.667   6.160   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.334   6.930   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.334   8.470   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.334  10.010   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -2.874   8.470   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.206   8.470   0.000  0.00  0.00           C+0
HETATM    7  N   UNK     0       0.000   6.160   0.000  0.00  0.00           N+0
HETATM    8  C   UNK     0       0.000   4.620   0.000  0.00  0.00           C+0
HETATM    9  N   UNK     0      -1.334   3.850   0.000  0.00  0.00           N+0
HETATM   10  C   UNK     0      -2.667   4.620   0.000  0.00  0.00           C+0
HETATM   11  N   UNK     0      -4.001   5.390   0.000  0.00  0.00           N+0
HETATM   12  N   UNK     0       1.334   3.850   0.000  0.00  0.00           N+0
HETATM   13  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM   16  N   UNK     0       1.334  -0.770   0.000  0.00  0.00           N+0
HETATM   17  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       1.334  -2.310   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    7                                                  
CONECT    3    2    4    5    6                                             
CONECT    4    3                                                            
CONECT    5    3                                                            
CONECT    6    3                                                            
CONECT    7    2    8                                                       
CONECT    8    7    9   12                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10                                                            
CONECT   12    8   13                                                       
CONECT   13   12   14   18                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   19                                                  
CONECT   17   16   18                                                       
CONECT   18   17   13                                                       
CONECT   19   16                                                            
MASTER        0    0    0    0    0    0    0    0   19    0   38    0
END

COMPND    HMDB0256557
HETATM    1  C1  UNL     1      -1.194  -0.586  -1.871  1.00  0.00           C  
HETATM    2  C2  UNL     1      -1.414  -0.013  -0.491  1.00  0.00           C  
HETATM    3  N1  UNL     1      -0.896  -0.891   0.532  1.00  0.00           N  
HETATM    4  C3  UNL     1       0.224  -0.677   1.126  1.00  0.00           C  
HETATM    5  N2  UNL     1       0.971   0.456   0.765  1.00  0.00           N  
HETATM    6  C4  UNL     1       2.188   0.442   0.351  1.00  0.00           C  
HETATM    7  C5  UNL     1       2.769   1.659   0.040  1.00  0.00           C  
HETATM    8  C6  UNL     1       4.068   1.678  -0.405  1.00  0.00           C  
HETATM    9  N3  UNL     1       4.723   0.510  -0.520  1.00  0.00           N  
HETATM   10  O1  UNL     1       6.040   0.550  -0.972  1.00  0.00           O  
HETATM   11  C7  UNL     1       4.176  -0.683  -0.222  1.00  0.00           C  
HETATM   12  C8  UNL     1       2.875  -0.750   0.228  1.00  0.00           C  
HETATM   13  N4  UNL     1       0.635  -1.605   2.114  1.00  0.00           N  
HETATM   14  C9  UNL     1       1.167  -1.186   3.333  1.00  0.00           C  
HETATM   15  N5  UNL     1       1.587  -0.839   4.346  1.00  0.00           N  
HETATM   16  C10 UNL     1      -2.887   0.193  -0.196  1.00  0.00           C  
HETATM   17  C11 UNL     1      -3.551  -1.168  -0.296  1.00  0.00           C  
HETATM   18  C12 UNL     1      -3.510   1.158  -1.161  1.00  0.00           C  
HETATM   19  C13 UNL     1      -2.974   0.761   1.207  1.00  0.00           C  
HETATM   20  H1  UNL     1      -1.879  -0.166  -2.621  1.00  0.00           H  
HETATM   21  H2  UNL     1      -0.160  -0.376  -2.208  1.00  0.00           H  
HETATM   22  H3  UNL     1      -1.340  -1.688  -1.888  1.00  0.00           H  
HETATM   23  H4  UNL     1      -0.852   0.943  -0.418  1.00  0.00           H  
HETATM   24  H5  UNL     1       2.217   2.589   0.141  1.00  0.00           H  
HETATM   25  H6  UNL     1       4.544   2.629  -0.656  1.00  0.00           H  
HETATM   26  H7  UNL     1       6.145   0.824  -1.945  1.00  0.00           H  
HETATM   27  H8  UNL     1       4.711  -1.602  -0.318  1.00  0.00           H  
HETATM   28  H9  UNL     1       2.398  -1.704   0.480  1.00  0.00           H  
HETATM   29  H10 UNL     1       0.522  -2.625   1.884  1.00  0.00           H  
HETATM   30  H11 UNL     1      -2.796  -1.996  -0.169  1.00  0.00           H  
HETATM   31  H12 UNL     1      -4.019  -1.298  -1.278  1.00  0.00           H  
HETATM   32  H13 UNL     1      -4.248  -1.272   0.548  1.00  0.00           H  
HETATM   33  H14 UNL     1      -4.456   1.541  -0.698  1.00  0.00           H  
HETATM   34  H15 UNL     1      -2.845   1.993  -1.387  1.00  0.00           H  
HETATM   35  H16 UNL     1      -3.829   0.581  -2.052  1.00  0.00           H  
HETATM   36  H17 UNL     1      -3.875   0.277   1.675  1.00  0.00           H  
HETATM   37  H18 UNL     1      -2.051   0.502   1.792  1.00  0.00           H  
HETATM   38  H19 UNL     1      -3.183   1.841   1.208  1.00  0.00           H  
CONECT    1    2   20   21   22
CONECT    2    3   16   23
CONECT    3    4    4
CONECT    4    5   13
CONECT    5    6    6
CONECT    6    7   12
CONECT    7    8    8   24
CONECT    8    9   25
CONECT    9   10   11
CONECT   10   26
CONECT   11   12   12   27
CONECT   12   28
CONECT   13   14   29
CONECT   14   15   15   15
CONECT   16   17   18   19
CONECT   17   30   31   32
CONECT   18   33   34   35
CONECT   19   36   37   38
END

HMDB0256557
     RDKit          3D
Pinacidil pyridine N-oxide
 38 38  0  0  0  0  0  0  0  0999 V2000
   -1.1940   -0.5856   -1.8707 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4138   -0.0130   -0.4908 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8956   -0.8915    0.5315 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.2235   -0.6772    1.1255 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9708    0.4562    0.7650 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.1884    0.4416    0.3512 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7686    1.6586    0.0399 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0677    1.6780   -0.4048 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7234    0.5100   -0.5195 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.0405    0.5498   -0.9723 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1758   -0.6828   -0.2216 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8748   -0.7499    0.2283 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6355   -1.6053    2.1138 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.1667   -1.1861    3.3333 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5867   -0.8389    4.3464 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8870    0.1927   -0.1956 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5508   -1.1684   -0.2957 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5098    1.1578   -1.1607 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9738    0.7606    1.2068 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8790   -0.1659   -2.6212 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1599   -0.3758   -2.2079 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3404   -1.6885   -1.8879 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8521    0.9431   -0.4175 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2166    2.5887    0.1414 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5443    2.6290   -0.6560 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1454    0.8239   -1.9452 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7109   -1.6015   -0.3184 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3979   -1.7036    0.4798 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5217   -2.6246    1.8842 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7961   -1.9959   -0.1692 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0187   -1.2984   -1.2777 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2481   -1.2723    0.5480 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4565    1.5410   -0.6984 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8452    1.9926   -1.3870 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8291    0.5809   -2.0519 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8753    0.2773    1.6755 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0509    0.5019    1.7920 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1831    1.8414    1.2076 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  3
  4  5  1  0
  5  6  2  3
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  1  0
  9 11  1  0
 11 12  2  0
  4 13  1  0
 13 14  1  0
 14 15  3  0
  2 16  1  0
 16 17  1  0
 16 18  1  0
 16 19  1  0
 12  6  1  0
  1 20  1  0
  1 21  1  0
  1 22  1  0
  2 23  1  0
  7 24  1  0
  8 25  1  0
 10 26  1  0
 11 27  1  0
 12 28  1  0
 13 29  1  0
 17 30  1  0
 17 31  1  0
 17 32  1  0
 18 33  1  0
 18 34  1  0
 18 35  1  0
 19 36  1  0
 19 37  1  0
 19 38  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
N-Cyano-n'-4-pyridinyl-N-oxide-n''-(1,2,2-trimethylpropyl)guanidine	HMDB
Pinacidil N-oxide	HMDB

Chemical Formula

C₁₃H₁₉N₅O

Average Molecular Weight

261.329

Monoisotopic Molecular Weight

261.158960252

IUPAC Name

N'-cyano-N''-(3,3-dimethylbutan-2-yl)-N-(1-hydroxy-1,4-dihydropyridin-4-ylidene)guanidine

Traditional Name

N'-cyano-N''-(3,3-dimethylbutan-2-yl)-N-(1-hydroxypyridin-4-ylidene)guanidine

CAS Registry Number

Not Available

SMILES

CC(N=C(NC#N)N=C1C=CN(O)C=C1)C(C)(C)C

InChI Identifier

InChI=1S/C13H19N5O/c1-10(13(2,3)4)16-12(15-9-14)17-11-5-7-18(19)8-6-11/h5-8,10,19H,1-4H3,(H,15,16)

InChI Key

DQRXZTGBHIYUGA-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as dihydropyridines. Dihydropyridines are compounds containing a dihydropyridine moiety, which is a semi-saturated pyridine derivative with two double bonds.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Pyridines and derivatives

Sub Class

Hydropyridines

Direct Parent

Dihydropyridines

Alternative Parents

Substituents

Dihydropyridine
Heteroaromatic compound
Secondary ketimine
Azacycle
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Carboximidamide
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Hydrocarbon derivative
Organonitrogen compound
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Non-excretory biofluid

Biofluid or Excreta

Blood (PMID: 31557052)

Source

Exogenous

Exogenous (PMID: 31557052)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	1.83	ALOGPS
logP	1.76	ChemAxon
logS	-3.3	ALOGPS
pKa (Strongest Acidic)	14.86	ChemAxon
pKa (Strongest Basic)	7.17	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	84.01 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	75.05 m³·mol⁻¹	ChemAxon
Polarizability	28.13 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M+H]+	162.535	30932474
DeepCCS	[M-H]-	160.139	30932474
DeepCCS	[M-2H]-	193.023	30932474
DeepCCS	[M+Na]+	168.579	30932474
AllCCS	[M+H]+	160.4	32859911
AllCCS	[M+H-H2O]+	157.1	32859911
AllCCS	[M+NH4]+	163.5	32859911
AllCCS	[M+Na]+	164.4	32859911
AllCCS	[M-H]-	165.0	32859911
AllCCS	[M+Na-2H]-	165.3	32859911
AllCCS	[M+HCOO]-	165.8	32859911

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.	2.25 minutes	32390414
Predicted by Siyang on May 30, 2022	12.2111 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	3.26 minutes	32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	601.5 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	298.7 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	51.2 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	164.4 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	51.0 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	398.9 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	280.6 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	603.5 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	738.8 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	46.8 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	748.2 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	177.6 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	256.0 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	571.7 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	518.8 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	98.7 seconds	40023050

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
Pinacidil pyridine N-oxide	CC(N=C(NC#N)N=C1C=CN(O)C=C1)C(C)(C)C	2945.2	Standard polar	33892256
Pinacidil pyridine N-oxide	CC(N=C(NC#N)N=C1C=CN(O)C=C1)C(C)(C)C	2197.5	Standard non polar	33892256
Pinacidil pyridine N-oxide	CC(N=C(NC#N)N=C1C=CN(O)C=C1)C(C)(C)C	2507.9	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
Pinacidil pyridine N-oxide,1TMS,isomer #1	CC(N=C(N=C1C=CN(O)C=C1)N(C#N)[Si](C)(C)C)C(C)(C)C	2345.0	Semi standard non polar	33892256
Pinacidil pyridine N-oxide,1TMS,isomer #1	CC(N=C(N=C1C=CN(O)C=C1)N(C#N)[Si](C)(C)C)C(C)(C)C	2371.8	Standard non polar	33892256
Pinacidil pyridine N-oxide,1TMS,isomer #1	CC(N=C(N=C1C=CN(O)C=C1)N(C#N)[Si](C)(C)C)C(C)(C)C	3430.3	Standard polar	33892256
Pinacidil pyridine N-oxide,1TBDMS,isomer #1	CC(N=C(N=C1C=CN(O)C=C1)N(C#N)[Si](C)(C)C(C)(C)C)C(C)(C)C	2583.9	Semi standard non polar	33892256
Pinacidil pyridine N-oxide,1TBDMS,isomer #1	CC(N=C(N=C1C=CN(O)C=C1)N(C#N)[Si](C)(C)C(C)(C)C)C(C)(C)C	2548.1	Standard non polar	33892256
Pinacidil pyridine N-oxide,1TBDMS,isomer #1	CC(N=C(N=C1C=CN(O)C=C1)N(C#N)[Si](C)(C)C(C)(C)C)C(C)(C)C	3403.6	Standard polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - Pinacidil pyridine N-oxide GC-MS (Non-derivatized) - 70eV, Positive	splash10-0bt9-9620000000-f8b527f80828ab49dec4	2021-09-23	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - Pinacidil pyridine N-oxide GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Blood

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Blood	Detected but not Quantified	Not Quantified	Not Specified	Not Specified	Normal	31557052	details

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

58309

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

64775

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]

Showing metabocard for Pinacidil pyridine N-oxide (HMDB0256557)

MOL for HMDB0256557 (Pinacidil pyridine N-oxide)

3D MOL for HMDB0256557 (Pinacidil pyridine N-oxide)

3D SDF for HMDB0256557 (Pinacidil pyridine N-oxide)

3D-SDF for HMDB0256557 (Pinacidil pyridine N-oxide)

PDB for HMDB0256557 (Pinacidil pyridine N-oxide)

3D PDB for HMDB0256557 (Pinacidil pyridine N-oxide)

SMILES for HMDB0256557 (Pinacidil pyridine N-oxide)

INCHI for HMDB0256557 (Pinacidil pyridine N-oxide)

Structure for HMDB0256557 (Pinacidil pyridine N-oxide)

3D Structure for HMDB0256557 (Pinacidil pyridine N-oxide)

Predicted Collision Cross Sections

Predicted Retention Times

Underivatized

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra