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Record Information

Version

5.0

Status

Detected but not Quantified

Creation Date

2021-09-11 18:23:43 UTC

Update Date

2021-09-26 23:13:48 UTC

HMDB ID

HMDB0257430

Secondary Accession Numbers

None

Metabolite Identification

Common Name

(3S,8R,9S,10R,13S,14S)-10,13-Dimethyl-17-pyrimidin-5-yl-2,3,4,7,8,9,11,12,14,15-decahydro-1H-cyclopenta[a]phenanthren-3-ol

Description

(3S,8R,9S,10R,13S,14S)-10,13-Dimethyl-17-pyrimidin-5-yl-2,3,4,7,8,9,11,12,14,15-decahydro-1H-cyclopenta[a]phenanthren-3-ol belongs to the class of organic compounds known as androgens and derivatives. These are 3-hydroxylated C19 steroid hormones. They are known to favor the development of masculine characteristics. They also show profound effects on scalp and body hair in humans. Based on a literature review very few articles have been published on (3S,8R,9S,10R,13S,14S)-10,13-Dimethyl-17-pyrimidin-5-yl-2,3,4,7,8,9,11,12,14,15-decahydro-1H-cyclopenta[a]phenanthren-3-ol. This compound has been identified in human blood as reported by (PMID: 31557052 ). (3s,8r,9s,10r,13s,14s)-10,13-dimethyl-17-pyrimidin-5-yl-2,3,4,7,8,9,11,12,14,15-decahydro-1h-cyclopenta[a]phenanthren-3-ol is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically (3S,8R,9S,10R,13S,14S)-10,13-Dimethyl-17-pyrimidin-5-yl-2,3,4,7,8,9,11,12,14,15-decahydro-1H-cyclopenta[a]phenanthren-3-ol is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv1652309112120242D          

 26 30  0  0  0  0            999 V2000
    4.5466   -0.5086    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8269    0.2673    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3587   -0.3634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1708   -0.2182    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4511    0.5577    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9193    1.1884    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1072    1.0432    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5754    1.6739    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7633    1.5287    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4830    0.7528    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0148    0.1221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7345   -0.6539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9224   -0.7991    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3905   -0.1684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6708    0.6076    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0195    1.1139    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3367    0.6509    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5660   -0.1416    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0596   -0.7929    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3705   -1.5571    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8642   -2.2084    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.0469   -2.0955    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2640   -1.3314    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.2424   -0.6800    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0307   -0.9107    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2632    0.7029    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  2  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
  2 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 10 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 14 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 19 24  1  0  0  0  0
 14 25  1  0  0  0  0
  5 26  1  0  0  0  0
M  END

HMDB0257430
     RDKit          3D
(3S,8R,9S,10R,13S,14S)-10,13-Dimethyl-17-pyrimidin-5-yl-2,3,4,7,8,9,11,12,14,...
 56 60  0  0  0  0  0  0  0  0999 V2000
    2.6274   -1.9573   -0.1619 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2236   -0.5572    0.1551 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9180   -0.1936    1.4798 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3901   -0.3951    1.4490 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0385   -0.3993    0.1108 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3059    0.2208    0.2668 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3324    0.3315   -0.9669 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8530    0.3596   -0.8258 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2146    1.2220   -1.6019 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7320    1.3051   -1.5070 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3932    1.0747   -0.0534 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7548   -0.3301    0.3295 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1185   -1.3080   -0.3795 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4964   -0.9345   -0.6885 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0219    0.3964   -0.3610 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5711    1.0453   -1.6460 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1127    0.4240    0.6285 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4463   -0.1685    0.4175 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4254   -0.0390    1.4061 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6203   -0.5982    1.1856 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9552   -1.2790    0.0810 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9970   -1.3876   -0.8503 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7808   -0.8655   -0.7189 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7713    1.0388    1.7282 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3859    1.5119    1.6260 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0386    1.3885    0.1772 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3075   -2.4128    0.6198 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8167   -2.6874   -0.2661 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1804   -2.0003   -1.1474 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7000    0.8848    1.6238 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4857   -0.8023    2.3104 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8431    0.4061    2.1074 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7092   -1.3457    1.9702 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3231   -1.4409   -0.2295 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7956    0.1601   -0.6130 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6835    1.3955   -0.9701 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6510   -0.0839   -1.9435 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7006    1.8816   -2.3120 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3541    2.3155   -1.7647 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3134    0.5695   -2.1890 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0022    1.7762    0.5468 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5284   -0.4363    1.4163 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4499   -1.6071   -1.3108 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0972   -2.2534    0.2404 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1975   -1.6721   -0.1778 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6828   -1.1644   -1.7837 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0119    1.9804   -1.8981 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6196    1.3168   -1.5801 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4243    0.3927   -2.5297 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2049    0.5058    2.3230 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9492   -1.7193   -0.0531 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0254   -0.9916   -1.5175 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4120    1.1993    2.6336 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7089    0.9114    2.2730 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3538    2.5916    1.9699 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1992    2.4247   -0.2570 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  5  7  1  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 15 17  1  0
 17 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  2  0
 21 22  1  0
 22 23  2  0
 17 24  2  0
 24 25  1  0
 25 26  1  0
  8  2  1  0
 26 11  1  0
 12  2  1  0
 26 15  1  0
 23 18  1  0
  1 27  1  0
  1 28  1  0
  1 29  1  0
  3 30  1  0
  3 31  1  0
  4 32  1  0
  4 33  1  0
  5 34  1  0
  6 35  1  0
  7 36  1  0
  7 37  1  0
  9 38  1  0
 10 39  1  0
 10 40  1  0
 11 41  1  0
 12 42  1  0
 13 43  1  0
 13 44  1  0
 14 45  1  0
 14 46  1  0
 16 47  1  0
 16 48  1  0
 16 49  1  0
 19 50  1  0
 21 51  1  0
 23 52  1  0
 24 53  1  0
 25 54  1  0
 25 55  1  0
 26 56  1  0
M  END


  Mrv1652309112120242D          

 26 30  0  0  0  0            999 V2000
    4.5466   -0.5086    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8269    0.2673    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3587   -0.3634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1708   -0.2182    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4511    0.5577    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9193    1.1884    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1072    1.0432    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5754    1.6739    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7633    1.5287    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4830    0.7528    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0148    0.1221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7345   -0.6539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9224   -0.7991    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3905   -0.1684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6708    0.6076    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0195    1.1139    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3367    0.6509    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5660   -0.1416    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0596   -0.7929    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3705   -1.5571    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8642   -2.2084    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.0469   -2.0955    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2640   -1.3314    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.2424   -0.6800    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0307   -0.9107    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2632    0.7029    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  2  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
  2 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 10 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 14 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 19 24  1  0  0  0  0
 14 25  1  0  0  0  0
  5 26  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0257430

> <DATABASE_NAME>
hmdb

> <SMILES>
CC12CCC3C(CC=C4CC(O)CCC34C)C1CC=C2C1=CN=CN=C1

> <INCHI_IDENTIFIER>
InChI=1S/C23H30N2O/c1-22-9-7-17(26)11-16(22)3-4-18-20-6-5-19(15-12-24-14-25-13-15)23(20,2)10-8-21(18)22/h3,5,12-14,17-18,20-21,26H,4,6-11H2,1-2H3

> <INCHI_KEY>
XMXLTCQVKKQCBG-UHFFFAOYSA-N

> <FORMULA>
C23H30N2O

> <MOLECULAR_WEIGHT>
350.506

> <EXACT_MASS>
350.235813594

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
56

> <JCHEM_AVERAGE_POLARIZABILITY>
41.313427572811534

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2,15-dimethyl-14-(pyrimidin-5-yl)tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadeca-7,13-dien-5-ol

> <ALOGPS_LOGP>
4.18

> <JCHEM_LOGP>
3.2594549776666684

> <ALOGPS_LOGS>
-4.51

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
18.204289505501876

> <JCHEM_PKA_STRONGEST_BASIC>
1.3418824291739475

> <JCHEM_POLAR_SURFACE_AREA>
46.010000000000005

> <JCHEM_REFRACTIVITY>
106.12359999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.09e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2,15-dimethyl-14-(pyrimidin-5-yl)tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadeca-7,13-dien-5-ol

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0257430
     RDKit          3D
(3S,8R,9S,10R,13S,14S)-10,13-Dimethyl-17-pyrimidin-5-yl-2,3,4,7,8,9,11,12,14,...
 56 60  0  0  0  0  0  0  0  0999 V2000
    2.6274   -1.9573   -0.1619 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2236   -0.5572    0.1551 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9180   -0.1936    1.4798 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3901   -0.3951    1.4490 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0385   -0.3993    0.1108 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3059    0.2208    0.2668 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3324    0.3315   -0.9669 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8530    0.3596   -0.8258 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2146    1.2220   -1.6019 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7320    1.3051   -1.5070 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3932    1.0747   -0.0534 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7548   -0.3301    0.3295 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1185   -1.3080   -0.3795 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4964   -0.9345   -0.6885 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0219    0.3964   -0.3610 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5711    1.0453   -1.6460 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1127    0.4240    0.6285 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4463   -0.1685    0.4175 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4254   -0.0390    1.4061 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6203   -0.5982    1.1856 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9552   -1.2790    0.0810 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9970   -1.3876   -0.8503 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7808   -0.8655   -0.7189 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7713    1.0388    1.7282 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3859    1.5119    1.6260 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0386    1.3885    0.1772 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3075   -2.4128    0.6198 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8167   -2.6874   -0.2661 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1804   -2.0003   -1.1474 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7000    0.8848    1.6238 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4857   -0.8023    2.3104 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8431    0.4061    2.1074 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7092   -1.3457    1.9702 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3231   -1.4409   -0.2295 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7956    0.1601   -0.6130 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6835    1.3955   -0.9701 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6510   -0.0839   -1.9435 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7006    1.8816   -2.3120 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3541    2.3155   -1.7647 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3134    0.5695   -2.1890 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0022    1.7762    0.5468 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5284   -0.4363    1.4163 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4499   -1.6071   -1.3108 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0972   -2.2534    0.2404 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1975   -1.6721   -0.1778 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6828   -1.1644   -1.7837 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0119    1.9804   -1.8981 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6196    1.3168   -1.5801 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4243    0.3927   -2.5297 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2049    0.5058    2.3230 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9492   -1.7193   -0.0531 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0254   -0.9916   -1.5175 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4120    1.1993    2.6336 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7089    0.9114    2.2730 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3538    2.5916    1.9699 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1992    2.4247   -0.2570 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  5  7  1  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 15 17  1  0
 17 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  2  0
 21 22  1  0
 22 23  2  0
 17 24  2  0
 24 25  1  0
 25 26  1  0
  8  2  1  0
 26 11  1  0
 12  2  1  0
 26 15  1  0
 23 18  1  0
  1 27  1  0
  1 28  1  0
  1 29  1  0
  3 30  1  0
  3 31  1  0
  4 32  1  0
  4 33  1  0
  5 34  1  0
  6 35  1  0
  7 36  1  0
  7 37  1  0
  9 38  1  0
 10 39  1  0
 10 40  1  0
 11 41  1  0
 12 42  1  0
 13 43  1  0
 13 44  1  0
 14 45  1  0
 14 46  1  0
 16 47  1  0
 16 48  1  0
 16 49  1  0
 19 50  1  0
 21 51  1  0
 23 52  1  0
 24 53  1  0
 25 54  1  0
 25 55  1  0
 26 56  1  0
M  END

HEADER    PROTEIN                                 11-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-21         0                                  
HETATM    1  C   UNK     0       8.487  -0.949   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.010   0.499   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      10.003  -0.678   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      11.519  -0.407   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      12.042   1.041   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      11.049   2.218   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       9.533   1.947   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       8.541   3.125   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       7.025   2.854   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.502   1.405   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       7.494   0.228   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       6.971  -1.221   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.455  -1.492   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.462  -0.314   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.986   1.134   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       3.770   2.079   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.495   1.215   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       2.923  -0.264   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       1.978  -1.480   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       2.558  -2.907   0.000  0.00  0.00           C+0
HETATM   21  N   UNK     0       1.613  -4.122   0.000  0.00  0.00           N+0
HETATM   22  C   UNK     0       0.088  -3.912   0.000  0.00  0.00           C+0
HETATM   23  N   UNK     0      -0.493  -2.485   0.000  0.00  0.00           N+0
HETATM   24  C   UNK     0       0.452  -1.269   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       3.791  -1.700   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      13.558   1.312   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    7   11                                             
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   26                                                  
CONECT    6    5    7                                                       
CONECT    7    6    2    8                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   15                                                  
CONECT   11   10    2   12                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   18   25                                             
CONECT   15   14   10   16                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   14   19                                                  
CONECT   19   18   20   24                                                  
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   19                                                       
CONECT   25   14                                                            
CONECT   26    5                                                            
MASTER        0    0    0    0    0    0    0    0   26    0   60    0
END

COMPND    HMDB0257430
HETATM    1  C1  UNL     1       2.627  -1.957  -0.162  1.00  0.00           C  
HETATM    2  C2  UNL     1       2.224  -0.557   0.155  1.00  0.00           C  
HETATM    3  C3  UNL     1       2.918  -0.194   1.480  1.00  0.00           C  
HETATM    4  C4  UNL     1       4.390  -0.395   1.449  1.00  0.00           C  
HETATM    5  C5  UNL     1       5.038  -0.399   0.111  1.00  0.00           C  
HETATM    6  O1  UNL     1       6.306   0.221   0.267  1.00  0.00           O  
HETATM    7  C6  UNL     1       4.332   0.332  -0.967  1.00  0.00           C  
HETATM    8  C7  UNL     1       2.853   0.360  -0.826  1.00  0.00           C  
HETATM    9  C8  UNL     1       2.215   1.222  -1.602  1.00  0.00           C  
HETATM   10  C9  UNL     1       0.732   1.305  -1.507  1.00  0.00           C  
HETATM   11  C10 UNL     1       0.393   1.075  -0.053  1.00  0.00           C  
HETATM   12  C11 UNL     1       0.755  -0.330   0.329  1.00  0.00           C  
HETATM   13  C12 UNL     1      -0.118  -1.308  -0.379  1.00  0.00           C  
HETATM   14  C13 UNL     1      -1.496  -0.934  -0.689  1.00  0.00           C  
HETATM   15  C14 UNL     1      -2.022   0.396  -0.361  1.00  0.00           C  
HETATM   16  C15 UNL     1      -2.571   1.045  -1.646  1.00  0.00           C  
HETATM   17  C16 UNL     1      -3.113   0.424   0.629  1.00  0.00           C  
HETATM   18  C17 UNL     1      -4.446  -0.168   0.417  1.00  0.00           C  
HETATM   19  C18 UNL     1      -5.425  -0.039   1.406  1.00  0.00           C  
HETATM   20  N1  UNL     1      -6.620  -0.598   1.186  1.00  0.00           N  
HETATM   21  C19 UNL     1      -6.955  -1.279   0.081  1.00  0.00           C  
HETATM   22  N2  UNL     1      -5.997  -1.388  -0.850  1.00  0.00           N  
HETATM   23  C20 UNL     1      -4.781  -0.865  -0.719  1.00  0.00           C  
HETATM   24  C21 UNL     1      -2.771   1.039   1.728  1.00  0.00           C  
HETATM   25  C22 UNL     1      -1.386   1.512   1.626  1.00  0.00           C  
HETATM   26  C23 UNL     1      -1.039   1.388   0.177  1.00  0.00           C  
HETATM   27  H1  UNL     1       3.307  -2.413   0.620  1.00  0.00           H  
HETATM   28  H2  UNL     1       1.817  -2.687  -0.266  1.00  0.00           H  
HETATM   29  H3  UNL     1       3.180  -2.000  -1.147  1.00  0.00           H  
HETATM   30  H4  UNL     1       2.700   0.885   1.624  1.00  0.00           H  
HETATM   31  H5  UNL     1       2.486  -0.802   2.310  1.00  0.00           H  
HETATM   32  H6  UNL     1       4.843   0.406   2.107  1.00  0.00           H  
HETATM   33  H7  UNL     1       4.709  -1.346   1.970  1.00  0.00           H  
HETATM   34  H8  UNL     1       5.323  -1.441  -0.229  1.00  0.00           H  
HETATM   35  H9  UNL     1       6.796   0.160  -0.613  1.00  0.00           H  
HETATM   36  H10 UNL     1       4.683   1.395  -0.970  1.00  0.00           H  
HETATM   37  H11 UNL     1       4.651  -0.084  -1.943  1.00  0.00           H  
HETATM   38  H12 UNL     1       2.701   1.882  -2.312  1.00  0.00           H  
HETATM   39  H13 UNL     1       0.354   2.315  -1.765  1.00  0.00           H  
HETATM   40  H14 UNL     1       0.313   0.570  -2.189  1.00  0.00           H  
HETATM   41  H15 UNL     1       1.002   1.776   0.547  1.00  0.00           H  
HETATM   42  H16 UNL     1       0.528  -0.436   1.416  1.00  0.00           H  
HETATM   43  H17 UNL     1       0.450  -1.607  -1.311  1.00  0.00           H  
HETATM   44  H18 UNL     1      -0.097  -2.253   0.240  1.00  0.00           H  
HETATM   45  H19 UNL     1      -2.198  -1.672  -0.178  1.00  0.00           H  
HETATM   46  H20 UNL     1      -1.683  -1.164  -1.784  1.00  0.00           H  
HETATM   47  H21 UNL     1      -2.012   1.980  -1.898  1.00  0.00           H  
HETATM   48  H22 UNL     1      -3.620   1.317  -1.580  1.00  0.00           H  
HETATM   49  H23 UNL     1      -2.424   0.393  -2.530  1.00  0.00           H  
HETATM   50  H24 UNL     1      -5.205   0.506   2.323  1.00  0.00           H  
HETATM   51  H25 UNL     1      -7.949  -1.719  -0.053  1.00  0.00           H  
HETATM   52  H26 UNL     1      -4.025  -0.992  -1.518  1.00  0.00           H  
HETATM   53  H27 UNL     1      -3.412   1.199   2.634  1.00  0.00           H  
HETATM   54  H28 UNL     1      -0.709   0.911   2.273  1.00  0.00           H  
HETATM   55  H29 UNL     1      -1.354   2.592   1.970  1.00  0.00           H  
HETATM   56  H30 UNL     1      -1.199   2.425  -0.257  1.00  0.00           H  
CONECT    1    2   27   28   29
CONECT    2    3    8   12
CONECT    3    4   30   31
CONECT    4    5   32   33
CONECT    5    6    7   34
CONECT    6   35
CONECT    7    8   36   37
CONECT    8    9    9
CONECT    9   10   38
CONECT   10   11   39   40
CONECT   11   12   26   41
CONECT   12   13   42
CONECT   13   14   43   44
CONECT   14   15   45   46
CONECT   15   16   17   26
CONECT   16   47   48   49
CONECT   17   18   24   24
CONECT   18   19   19   23
CONECT   19   20   50
CONECT   20   21   21
CONECT   21   22   51
CONECT   22   23   23
CONECT   23   52
CONECT   24   25   53
CONECT   25   26   54   55
CONECT   26   56
END

HMDB0257430
     RDKit          3D
(3S,8R,9S,10R,13S,14S)-10,13-Dimethyl-17-pyrimidin-5-yl-2,3,4,7,8,9,11,12,14,...
 56 60  0  0  0  0  0  0  0  0999 V2000
    2.6274   -1.9573   -0.1619 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2236   -0.5572    0.1551 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9180   -0.1936    1.4798 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3901   -0.3951    1.4490 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0385   -0.3993    0.1108 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3059    0.2208    0.2668 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3324    0.3315   -0.9669 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8530    0.3596   -0.8258 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2146    1.2220   -1.6019 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7320    1.3051   -1.5070 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3932    1.0747   -0.0534 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7548   -0.3301    0.3295 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1185   -1.3080   -0.3795 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4964   -0.9345   -0.6885 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0219    0.3964   -0.3610 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5711    1.0453   -1.6460 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1127    0.4240    0.6285 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4463   -0.1685    0.4175 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4254   -0.0390    1.4061 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6203   -0.5982    1.1856 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9552   -1.2790    0.0810 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9970   -1.3876   -0.8503 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7808   -0.8655   -0.7189 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7713    1.0388    1.7282 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3859    1.5119    1.6260 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0386    1.3885    0.1772 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3075   -2.4128    0.6198 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8167   -2.6874   -0.2661 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1804   -2.0003   -1.1474 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7000    0.8848    1.6238 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4857   -0.8023    2.3104 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8431    0.4061    2.1074 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7092   -1.3457    1.9702 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3231   -1.4409   -0.2295 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7956    0.1601   -0.6130 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6835    1.3955   -0.9701 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6510   -0.0839   -1.9435 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7006    1.8816   -2.3120 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3541    2.3155   -1.7647 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3134    0.5695   -2.1890 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0022    1.7762    0.5468 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5284   -0.4363    1.4163 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4499   -1.6071   -1.3108 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0972   -2.2534    0.2404 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1975   -1.6721   -0.1778 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6828   -1.1644   -1.7837 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0119    1.9804   -1.8981 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6196    1.3168   -1.5801 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4243    0.3927   -2.5297 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2049    0.5058    2.3230 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9492   -1.7193   -0.0531 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0254   -0.9916   -1.5175 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4120    1.1993    2.6336 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7089    0.9114    2.2730 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3538    2.5916    1.9699 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1992    2.4247   -0.2570 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  5  7  1  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 15 17  1  0
 17 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  2  0
 21 22  1  0
 22 23  2  0
 17 24  2  0
 24 25  1  0
 25 26  1  0
  8  2  1  0
 26 11  1  0
 12  2  1  0
 26 15  1  0
 23 18  1  0
  1 27  1  0
  1 28  1  0
  1 29  1  0
  3 30  1  0
  3 31  1  0
  4 32  1  0
  4 33  1  0
  5 34  1  0
  6 35  1  0
  7 36  1  0
  7 37  1  0
  9 38  1  0
 10 39  1  0
 10 40  1  0
 11 41  1  0
 12 42  1  0
 13 43  1  0
 13 44  1  0
 14 45  1  0
 14 46  1  0
 16 47  1  0
 16 48  1  0
 16 49  1  0
 19 50  1  0
 21 51  1  0
 23 52  1  0
 24 53  1  0
 25 54  1  0
 25 55  1  0
 26 56  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Not Available

Chemical Formula

C₂₃H₃₀N₂O

Average Molecular Weight

350.506

Monoisotopic Molecular Weight

350.235813594

IUPAC Name

2,15-dimethyl-14-(pyrimidin-5-yl)tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadeca-7,13-dien-5-ol

Traditional Name

2,15-dimethyl-14-(pyrimidin-5-yl)tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadeca-7,13-dien-5-ol

CAS Registry Number

Not Available

SMILES

CC12CCC3C(CC=C4CC(O)CCC34C)C1CC=C2C1=CN=CN=C1

InChI Identifier

InChI=1S/C23H30N2O/c1-22-9-7-17(26)11-16(22)3-4-18-20-6-5-19(15-12-24-14-25-13-15)23(20,2)10-8-21(18)22/h3,5,12-14,17-18,20-21,26H,4,6-11H2,1-2H3

InChI Key

XMXLTCQVKKQCBG-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as androgens and derivatives. These are 3-hydroxylated C19 steroid hormones. They are known to favor the development of masculine characteristics. They also show profound effects on scalp and body hair in humans.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Androstane steroids

Direct Parent

Androgens and derivatives

Alternative Parents

Substituents

Androgen-skeleton
3-hydroxy-delta-5-steroid
3-hydroxysteroid
Hydroxysteroid
Delta-5-steroid
Pyrimidine
Cyclic alcohol
Heteroaromatic compound
Secondary alcohol
Azacycle
Organoheterocyclic compound
Organic nitrogen compound
Organonitrogen compound
Organooxygen compound
Hydrocarbon derivative
Organopnictogen compound
Alcohol
Organic oxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Non-excretory biofluid

Biofluid or Excreta

Blood (PMID: 31557052)

Source

Exogenous

Exogenous (PMID: 31557052)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	4.18	ALOGPS
logP	3.26	ChemAxon
logS	-4.5	ALOGPS
pKa (Strongest Acidic)	18.2	ChemAxon
pKa (Strongest Basic)	1.34	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	46.01 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	106.12 m³·mol⁻¹	ChemAxon
Polarizability	41.31 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M-2H]-	218.366	30932474
DeepCCS	[M+Na]+	194.622	30932474

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022.	6.36 minutes	32390414
Predicted by Siyang on May 30, 2022	16.4561 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	1.62 minutes	32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	2551.3 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	369.0 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	210.5 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	184.3 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	427.7 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	628.5 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	669.3 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	108.3 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	1341.6 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	452.8 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	1535.8 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	458.0 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	426.5 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	300.6 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	493.4 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	7.8 seconds	40023050

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
(3S,8R,9S,10R,13S,14S)-10,13-Dimethyl-17-pyrimidin-5-yl-2,3,4,7,8,9,11,12,14,15-decahydro-1H-cyclopenta[a]phenanthren-3-ol	CC12CCC3C(CC=C4CC(O)CCC34C)C1CC=C2C1=CN=CN=C1	3645.4	Standard polar	33892256
(3S,8R,9S,10R,13S,14S)-10,13-Dimethyl-17-pyrimidin-5-yl-2,3,4,7,8,9,11,12,14,15-decahydro-1H-cyclopenta[a]phenanthren-3-ol	CC12CCC3C(CC=C4CC(O)CCC34C)C1CC=C2C1=CN=CN=C1	3127.3	Standard non polar	33892256
(3S,8R,9S,10R,13S,14S)-10,13-Dimethyl-17-pyrimidin-5-yl-2,3,4,7,8,9,11,12,14,15-decahydro-1H-cyclopenta[a]phenanthren-3-ol	CC12CCC3C(CC=C4CC(O)CCC34C)C1CC=C2C1=CN=CN=C1	3158.2	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - (3S,8R,9S,10R,13S,14S)-10,13-Dimethyl-17-pyrimidin-5-yl-2,3,4,7,8,9,11,12,14,15-decahydro-1H-cyclopenta[a]phenanthren-3-ol GC-MS (Non-derivatized) - 70eV, Positive	splash10-00dr-0339000000-5a6a9e24d289d08763f6	2021-09-24	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (3S,8R,9S,10R,13S,14S)-10,13-Dimethyl-17-pyrimidin-5-yl-2,3,4,7,8,9,11,12,14,15-decahydro-1H-cyclopenta[a]phenanthren-3-ol GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (3S,8R,9S,10R,13S,14S)-10,13-Dimethyl-17-pyrimidin-5-yl-2,3,4,7,8,9,11,12,14,15-decahydro-1H-cyclopenta[a]phenanthren-3-ol GC-MS (TMS_1_1) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (3S,8R,9S,10R,13S,14S)-10,13-Dimethyl-17-pyrimidin-5-yl-2,3,4,7,8,9,11,12,14,15-decahydro-1H-cyclopenta[a]phenanthren-3-ol GC-MS (TBDMS_1_1) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Blood

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Blood	Detected but not Quantified	Not Quantified	Not Specified	Not Specified	Normal	31557052	details

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

74992049

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]

Showing metabocard for (3S,8R,9S,10R,13S,14S)-10,13-Dimethyl-17-pyrimidin-5-yl-2,3,4,7,8,9,11,12,14,15-decahydro-1H-cyclopenta[a]phenanthren-3-ol (HMDB0257430)

MOL for HMDB0257430 ((3S,8R,9S,10R,13S,14S)-10,13-Dimethyl-17-pyrimidin-5-yl-2,3,4,7,8,9,11,12,14,15-decahydro-1H-cyclopenta[a]phenanthren-3-ol)

3D MOL for HMDB0257430 ((3S,8R,9S,10R,13S,14S)-10,13-Dimethyl-17-pyrimidin-5-yl-2,3,4,7,8,9,11,12,14,15-decahydro-1H-cyclopenta[a]phenanthren-3-ol)

3D SDF for HMDB0257430 ((3S,8R,9S,10R,13S,14S)-10,13-Dimethyl-17-pyrimidin-5-yl-2,3,4,7,8,9,11,12,14,15-decahydro-1H-cyclopenta[a]phenanthren-3-ol)

3D-SDF for HMDB0257430 ((3S,8R,9S,10R,13S,14S)-10,13-Dimethyl-17-pyrimidin-5-yl-2,3,4,7,8,9,11,12,14,15-decahydro-1H-cyclopenta[a]phenanthren-3-ol)

PDB for HMDB0257430 ((3S,8R,9S,10R,13S,14S)-10,13-Dimethyl-17-pyrimidin-5-yl-2,3,4,7,8,9,11,12,14,15-decahydro-1H-cyclopenta[a]phenanthren-3-ol)

3D PDB for HMDB0257430 ((3S,8R,9S,10R,13S,14S)-10,13-Dimethyl-17-pyrimidin-5-yl-2,3,4,7,8,9,11,12,14,15-decahydro-1H-cyclopenta[a]phenanthren-3-ol)

SMILES for HMDB0257430 ((3S,8R,9S,10R,13S,14S)-10,13-Dimethyl-17-pyrimidin-5-yl-2,3,4,7,8,9,11,12,14,15-decahydro-1H-cyclopenta[a]phenanthren-3-ol)

INCHI for HMDB0257430 ((3S,8R,9S,10R,13S,14S)-10,13-Dimethyl-17-pyrimidin-5-yl-2,3,4,7,8,9,11,12,14,15-decahydro-1H-cyclopenta[a]phenanthren-3-ol)

Structure for HMDB0257430 ((3S,8R,9S,10R,13S,14S)-10,13-Dimethyl-17-pyrimidin-5-yl-2,3,4,7,8,9,11,12,14,15-decahydro-1H-cyclopenta[a]phenanthren-3-ol)

3D Structure for HMDB0257430 ((3S,8R,9S,10R,13S,14S)-10,13-Dimethyl-17-pyrimidin-5-yl-2,3,4,7,8,9,11,12,14,15-decahydro-1H-cyclopenta[a]phenanthren-3-ol)

Predicted Collision Cross Sections

Predicted Retention Times

Underivatized

Predicted Kovats Retention Indices

Underivatized

GC-MS Spectra