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Record Information

Version

5.0

Status

Detected but not Quantified

Creation Date

2021-09-11 18:52:53 UTC

Update Date

2021-09-26 23:14:21 UTC

HMDB ID

HMDB0257791

Secondary Accession Numbers

None

Metabolite Identification

Common Name

(2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid

Description

(2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid belongs to the class of organic compounds known as dipeptides. These are organic compounds containing a sequence of exactly two alpha-amino acids joined by a peptide bond. Based on a literature review very few articles have been published on (2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid. This compound has been identified in human blood as reported by (PMID: 31557052 ). (2s)-3-hydroxy-1-[(2s)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically (2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0257791
     RDKit          3D
(2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid
 32 33  0  0  0  0  0  0  0  0999 V2000
    1.8442   -2.3127   -0.6714 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4917   -1.6474    0.1497 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6985   -2.1170    0.6100 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0147   -0.3207    0.6820 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0150    0.6930    0.1669 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2029    0.1317   -0.2367 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2712    1.2553   -1.0534 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8751    1.3677   -0.4329 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7298    0.0396    0.1225 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4274   -0.7413    0.1251 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3924   -1.8967    0.6453 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7332   -0.3146   -0.4494 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2901    0.8940    0.2865 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7926    0.6940    0.0435 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9049   -0.7920    0.2872 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7332   -1.3453   -0.3308 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.9575   -2.1802    1.5821 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0307   -0.3126    1.7842 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1525    1.5339    0.8737 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8807    0.0685    0.4721 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2400    0.4754   -1.8151 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6604    2.2223   -1.3643 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1139    1.5609   -1.2145 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8925    2.1039    0.3709 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5861   -0.0351   -1.5103 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9701    1.8543   -0.1121 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0863    0.8089    1.3569 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9773    0.8631   -1.0458 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4071    1.3015    0.7021 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8533   -1.1625   -0.1588 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8972   -0.9645    1.3949 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0200   -1.7255   -1.2604 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  5  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 10 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
  9  4  1  0
 16 12  1  0
  3 17  1  0
  4 18  1  0
  5 19  1  0
  6 20  1  0
  7 21  1  0
  7 22  1  0
  8 23  1  0
  8 24  1  0
 12 25  1  0
 13 26  1  0
 13 27  1  0
 14 28  1  0
 14 29  1  0
 15 30  1  0
 15 31  1  0
 16 32  1  0
M  END


  Mrv1652309112120532D          

 16 17  0  0  0  0            999 V2000
   -0.3946   -2.7419    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6495   -1.9573    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0179   -1.4724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6854   -1.9573    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.4304   -2.7419    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0179   -0.6474    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7324   -0.2349    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6965   -0.2349    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4502   -0.5705    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0022    0.0426    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5897    0.7571    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7828    0.5856    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1697    1.1376    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3412    1.9446    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6149    0.8827    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9253    1.5108    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  1  5  1  0  0  0  0
  3  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
  8 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 11 16  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0257791

> <DATABASE_NAME>
hmdb

> <SMILES>
OC1CCN(C1C(O)=O)C(=O)C1CCCN1

> <INCHI_IDENTIFIER>
InChI=1S/C10H16N2O4/c13-7-3-5-12(8(7)10(15)16)9(14)6-2-1-4-11-6/h6-8,11,13H,1-5H2,(H,15,16)

> <INCHI_KEY>
JZIYFOXZKMYPMV-UHFFFAOYSA-N

> <FORMULA>
C10H16N2O4

> <MOLECULAR_WEIGHT>
228.248

> <EXACT_MASS>
228.111007003

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
32

> <JCHEM_AVERAGE_POLARIZABILITY>
22.58866109319394

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3-hydroxy-1-(pyrrolidine-2-carbonyl)pyrrolidine-2-carboxylic acid

> <ALOGPS_LOGP>
-2.89

> <JCHEM_LOGP>
-3.980836755553649

> <ALOGPS_LOGS>
-0.19

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.555958387969255

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.502937098191854

> <JCHEM_PKA_STRONGEST_BASIC>
9.81739479525427

> <JCHEM_POLAR_SURFACE_AREA>
89.87

> <JCHEM_REFRACTIVITY>
54.368700000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.47e+02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-hydroxy-1-(pyrrolidine-2-carbonyl)pyrrolidine-2-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0257791
     RDKit          3D
(2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid
 32 33  0  0  0  0  0  0  0  0999 V2000
    1.8442   -2.3127   -0.6714 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4917   -1.6474    0.1497 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6985   -2.1170    0.6100 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0147   -0.3207    0.6820 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0150    0.6930    0.1669 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2029    0.1317   -0.2367 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2712    1.2553   -1.0534 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8751    1.3677   -0.4329 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7298    0.0396    0.1225 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4274   -0.7413    0.1251 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3924   -1.8967    0.6453 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7332   -0.3146   -0.4494 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2901    0.8940    0.2865 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7926    0.6940    0.0435 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9049   -0.7920    0.2872 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7332   -1.3453   -0.3308 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.9575   -2.1802    1.5821 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0307   -0.3126    1.7842 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1525    1.5339    0.8737 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8807    0.0685    0.4721 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2400    0.4754   -1.8151 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6604    2.2223   -1.3643 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1139    1.5609   -1.2145 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8925    2.1039    0.3709 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5861   -0.0351   -1.5103 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9701    1.8543   -0.1121 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0863    0.8089    1.3569 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9773    0.8631   -1.0458 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4071    1.3015    0.7021 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8533   -1.1625   -0.1588 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8972   -0.9645    1.3949 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0200   -1.7255   -1.2604 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  5  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 10 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
  9  4  1  0
 16 12  1  0
  3 17  1  0
  4 18  1  0
  5 19  1  0
  6 20  1  0
  7 21  1  0
  7 22  1  0
  8 23  1  0
  8 24  1  0
 12 25  1  0
 13 26  1  0
 13 27  1  0
 14 28  1  0
 14 29  1  0
 15 30  1  0
 15 31  1  0
 16 32  1  0
M  END

HEADER    PROTEIN                                 11-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-21         0                                  
HETATM    1  C   UNK     0      -0.737  -5.118   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.212  -3.654   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.033  -2.748   0.000  0.00  0.00           C+0
HETATM    4  N   UNK     0       1.279  -3.654   0.000  0.00  0.00           N+0
HETATM    5  C   UNK     0       0.803  -5.118   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.033  -1.208   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       1.367  -0.438   0.000  0.00  0.00           O+0
HETATM    8  N   UNK     0      -1.300  -0.438   0.000  0.00  0.00           N+0
HETATM    9  C   UNK     0      -2.707  -1.065   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -3.738   0.080   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -2.968   1.413   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -1.461   1.093   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -0.317   2.124   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      -0.637   3.630   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0       1.148   1.648   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0      -3.594   2.820   0.000  0.00  0.00           O+0
CONECT    1    2    5                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4    6                                                  
CONECT    4    3    5                                                       
CONECT    5    4    1                                                       
CONECT    6    3    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   12                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   16                                                  
CONECT   12   11    8   13                                                  
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13                                                            
CONECT   16   11                                                            
MASTER        0    0    0    0    0    0    0    0   16    0   34    0
END

COMPND    HMDB0257791
HETATM    1  O1  UNL     1       1.844  -2.313  -0.671  1.00  0.00           O  
HETATM    2  C1  UNL     1       2.492  -1.647   0.150  1.00  0.00           C  
HETATM    3  O2  UNL     1       3.699  -2.117   0.610  1.00  0.00           O  
HETATM    4  C2  UNL     1       2.015  -0.321   0.682  1.00  0.00           C  
HETATM    5  C3  UNL     1       3.015   0.693   0.167  1.00  0.00           C  
HETATM    6  O3  UNL     1       4.203   0.132  -0.237  1.00  0.00           O  
HETATM    7  C4  UNL     1       2.271   1.255  -1.053  1.00  0.00           C  
HETATM    8  C5  UNL     1       0.875   1.368  -0.433  1.00  0.00           C  
HETATM    9  N1  UNL     1       0.730   0.040   0.123  1.00  0.00           N  
HETATM   10  C6  UNL     1      -0.427  -0.741   0.125  1.00  0.00           C  
HETATM   11  O4  UNL     1      -0.392  -1.897   0.645  1.00  0.00           O  
HETATM   12  C7  UNL     1      -1.733  -0.315  -0.449  1.00  0.00           C  
HETATM   13  C8  UNL     1      -2.290   0.894   0.286  1.00  0.00           C  
HETATM   14  C9  UNL     1      -3.793   0.694   0.044  1.00  0.00           C  
HETATM   15  C10 UNL     1      -3.905  -0.792   0.287  1.00  0.00           C  
HETATM   16  N2  UNL     1      -2.733  -1.345  -0.331  1.00  0.00           N  
HETATM   17  H1  UNL     1       3.958  -2.180   1.582  1.00  0.00           H  
HETATM   18  H2  UNL     1       2.031  -0.313   1.784  1.00  0.00           H  
HETATM   19  H3  UNL     1       3.152   1.534   0.874  1.00  0.00           H  
HETATM   20  H4  UNL     1       4.881   0.069   0.472  1.00  0.00           H  
HETATM   21  H5  UNL     1       2.240   0.475  -1.815  1.00  0.00           H  
HETATM   22  H6  UNL     1       2.660   2.222  -1.364  1.00  0.00           H  
HETATM   23  H7  UNL     1       0.114   1.561  -1.214  1.00  0.00           H  
HETATM   24  H8  UNL     1       0.893   2.104   0.371  1.00  0.00           H  
HETATM   25  H9  UNL     1      -1.586  -0.035  -1.510  1.00  0.00           H  
HETATM   26  H10 UNL     1      -1.970   1.854  -0.112  1.00  0.00           H  
HETATM   27  H11 UNL     1      -2.086   0.809   1.357  1.00  0.00           H  
HETATM   28  H12 UNL     1      -3.977   0.863  -1.046  1.00  0.00           H  
HETATM   29  H13 UNL     1      -4.407   1.301   0.702  1.00  0.00           H  
HETATM   30  H14 UNL     1      -4.853  -1.163  -0.159  1.00  0.00           H  
HETATM   31  H15 UNL     1      -3.897  -0.964   1.395  1.00  0.00           H  
HETATM   32  H16 UNL     1      -3.020  -1.725  -1.260  1.00  0.00           H  
CONECT    1    2    2
CONECT    2    3    4
CONECT    3   17
CONECT    4    5    9   18
CONECT    5    6    7   19
CONECT    6   20
CONECT    7    8   21   22
CONECT    8    9   23   24
CONECT    9   10
CONECT   10   11   11   12
CONECT   12   13   16   25
CONECT   13   14   26   27
CONECT   14   15   28   29
CONECT   15   16   30   31
CONECT   16   32
END

HMDB0257791
     RDKit          3D
(2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid
 32 33  0  0  0  0  0  0  0  0999 V2000
    1.8442   -2.3127   -0.6714 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4917   -1.6474    0.1497 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6985   -2.1170    0.6100 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0147   -0.3207    0.6820 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0150    0.6930    0.1669 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2029    0.1317   -0.2367 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2712    1.2553   -1.0534 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8751    1.3677   -0.4329 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7298    0.0396    0.1225 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4274   -0.7413    0.1251 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3924   -1.8967    0.6453 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7332   -0.3146   -0.4494 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2901    0.8940    0.2865 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7926    0.6940    0.0435 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9049   -0.7920    0.2872 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7332   -1.3453   -0.3308 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.9575   -2.1802    1.5821 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0307   -0.3126    1.7842 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1525    1.5339    0.8737 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8807    0.0685    0.4721 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2400    0.4754   -1.8151 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6604    2.2223   -1.3643 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1139    1.5609   -1.2145 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8925    2.1039    0.3709 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5861   -0.0351   -1.5103 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9701    1.8543   -0.1121 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0863    0.8089    1.3569 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9773    0.8631   -1.0458 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4071    1.3015    0.7021 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8533   -1.1625   -0.1588 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8972   -0.9645    1.3949 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0200   -1.7255   -1.2604 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  5  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 10 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
  9  4  1  0
 16 12  1  0
  3 17  1  0
  4 18  1  0
  5 19  1  0
  6 20  1  0
  7 21  1  0
  7 22  1  0
  8 23  1  0
  8 24  1  0
 12 25  1  0
 13 26  1  0
 13 27  1  0
 14 28  1  0
 14 29  1  0
 15 30  1  0
 15 31  1  0
 16 32  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
(2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylate	Generator
3-Hydroxy-1-(pyrrolidine-2-carbonyl)pyrrolidine-2-carboxylate	HMDB

Chemical Formula

C₁₀H₁₆N₂O₄

Average Molecular Weight

228.248

Monoisotopic Molecular Weight

228.111007003

IUPAC Name

3-hydroxy-1-(pyrrolidine-2-carbonyl)pyrrolidine-2-carboxylic acid

Traditional Name

3-hydroxy-1-(pyrrolidine-2-carbonyl)pyrrolidine-2-carboxylic acid

CAS Registry Number

Not Available

SMILES

OC1CCN(C1C(O)=O)C(=O)C1CCCN1

InChI Identifier

InChI=1S/C10H16N2O4/c13-7-3-5-12(8(7)10(15)16)9(14)6-2-1-4-11-6/h6-8,11,13H,1-5H2,(H,15,16)

InChI Key

JZIYFOXZKMYPMV-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as dipeptides. These are organic compounds containing a sequence of exactly two alpha-amino acids joined by a peptide bond.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Dipeptides

Alternative Parents

Substituents

Alpha-dipeptide
N-acyl-alpha amino acid or derivatives
Proline or derivatives
N-acyl-alpha-amino acid
Alpha-amino acid amide
Alpha-amino acid or derivatives
N-acylpyrrolidine
Pyrrolidine carboxylic acid
Pyrrolidine carboxylic acid or derivatives
Pyrrolidine-2-carboxamide
Beta-hydroxy acid
Hydroxy acid
Pyrrolidine
Tertiary carboxylic acid amide
Amino acid
Secondary alcohol
Amino acid or derivatives
Carboxamide group
Azacycle
Carboxylic acid
Secondary aliphatic amine
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Secondary amine
Alcohol
Carbonyl group
Hydrocarbon derivative
Organic nitrogen compound
Organic oxygen compound
Amine
Organic oxide
Organooxygen compound
Organonitrogen compound
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Non-excretory biofluid

Biofluid or Excreta

Blood (PMID: 31557052)

Source

Exogenous

Exogenous (PMID: 31557052)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	-2.9	ALOGPS
logP	-4	ChemAxon
logS	-0.19	ALOGPS
pKa (Strongest Acidic)	3.5	ChemAxon
pKa (Strongest Basic)	9.82	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	89.87 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	54.37 m³·mol⁻¹	ChemAxon
Polarizability	22.59 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M+H]+	146.925	30932474
DeepCCS	[M-H]-	144.567	30932474
DeepCCS	[M-2H]-	178.495	30932474
DeepCCS	[M+Na]+	153.234	30932474

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.	1.98 minutes	32390414
Predicted by Siyang on May 30, 2022	8.7954 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	6.66 minutes	32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	451.3 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	238.9 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	68.9 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	164.1 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	46.2 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	264.2 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	252.0 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	819.0 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	545.7 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	49.0 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	706.7 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	179.0 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	210.1 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	774.5 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	539.1 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	325.3 seconds	40023050

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
(2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid	OC1CCN(C1C(O)=O)C(=O)C1CCCN1	3173.9	Standard polar	33892256
(2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid	OC1CCN(C1C(O)=O)C(=O)C1CCCN1	2029.6	Standard non polar	33892256
(2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid	OC1CCN(C1C(O)=O)C(=O)C1CCCN1	2221.5	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
(2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid,3TMS,isomer #1	C[Si](C)(C)OC(=O)C1C(O[Si](C)(C)C)CCN1C(=O)C1CCCN1[Si](C)(C)C	2214.4	Semi standard non polar	33892256
(2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid,3TMS,isomer #1	C[Si](C)(C)OC(=O)C1C(O[Si](C)(C)C)CCN1C(=O)C1CCCN1[Si](C)(C)C	2222.6	Standard non polar	33892256
(2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid,3TMS,isomer #1	C[Si](C)(C)OC(=O)C1C(O[Si](C)(C)C)CCN1C(=O)C1CCCN1[Si](C)(C)C	2571.7	Standard polar	33892256
(2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid,3TBDMS,isomer #1	CC(C)(C)[Si](C)(C)OC(=O)C1C(O[Si](C)(C)C(C)(C)C)CCN1C(=O)C1CCCN1[Si](C)(C)C(C)(C)C	2875.5	Semi standard non polar	33892256
(2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid,3TBDMS,isomer #1	CC(C)(C)[Si](C)(C)OC(=O)C1C(O[Si](C)(C)C(C)(C)C)CCN1C(=O)C1CCCN1[Si](C)(C)C(C)(C)C	2846.5	Standard non polar	33892256
(2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid,3TBDMS,isomer #1	CC(C)(C)[Si](C)(C)OC(=O)C1C(O[Si](C)(C)C(C)(C)C)CCN1C(=O)C1CCCN1[Si](C)(C)C(C)(C)C	2900.9	Standard polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - (2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid GC-MS (Non-derivatized) - 70eV, Positive	splash10-0ab9-9100000000-0b6dd0ed8cdd5be0d251	2021-09-24	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid GC-MS (TMS_1_1) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid GC-MS (TMS_1_2) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid GC-MS (TMS_1_3) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid GC-MS (TMS_2_1) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid GC-MS (TMS_2_2) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid GC-MS (TMS_2_3) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid GC-MS (TBDMS_1_1) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid GC-MS (TBDMS_1_2) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid GC-MS (TBDMS_1_3) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid GC-MS (TBDMS_2_1) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid GC-MS (TBDMS_2_2) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - (2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid GC-MS (TBDMS_2_3) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Blood

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Biospecimen	Status	Value	Age	Sex	Condition	Reference	Details
Blood	Detected but not Quantified	Not Quantified	Not Specified	Not Specified	Normal	31557052	details

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

73201828

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]

Showing metabocard for (2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid (HMDB0257791)

MOL for HMDB0257791 ((2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid)

3D MOL for HMDB0257791 ((2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid)

3D SDF for HMDB0257791 ((2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid)

3D-SDF for HMDB0257791 ((2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid)

PDB for HMDB0257791 ((2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid)

3D PDB for HMDB0257791 ((2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid)

SMILES for HMDB0257791 ((2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid)

INCHI for HMDB0257791 ((2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid)

Structure for HMDB0257791 ((2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid)

3D Structure for HMDB0257791 ((2S)-3-Hydroxy-1-[(2S)-pyrrolidine-2-carbonyl]pyrrolidine-2-carboxylic acid)

Predicted Collision Cross Sections

Predicted Retention Times

Underivatized

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra