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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 22:49:07 UTC
Update Date2021-09-26 23:17:42 UTC
HMDB IDHMDB0259870
Secondary Accession NumbersNone
Metabolite Identification
Common NameVolixibat
Description{[4-(benzyloxy)-6-[({3-[3-butyl-7-(dimethylamino)-3-ethyl-4-hydroxy-1,1-dioxo-2,3,4,5-tetrahydro-1λ⁶-benzothiepin-5-yl]phenyl}-C-hydroxycarbonimidoyl)amino]-3,5-dihydroxyoxan-2-yl]methoxy}sulfonic acid belongs to the class of organic compounds known as hexoses. These are monosaccharides in which the sugar unit is a is a six-carbon containing moeity. Based on a literature review very few articles have been published on {[4-(benzyloxy)-6-[({3-[3-butyl-7-(dimethylamino)-3-ethyl-4-hydroxy-1,1-dioxo-2,3,4,5-tetrahydro-1λ⁶-benzothiepin-5-yl]phenyl}-C-hydroxycarbonimidoyl)amino]-3,5-dihydroxyoxan-2-yl]methoxy}sulfonic acid. This compound has been identified in human blood as reported by (PMID: 31557052 ). Volixibat is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Volixibat is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
{[4-(benzyloxy)-6-[({3-[3-butyl-7-(dimethylamino)-3-ethyl-4-hydroxy-1,1-dioxo-2,3,4,5-tetrahydro-1-benzothiepin-5-yl]phenyl}-C-hydroxycarbonimidoyl)amino]-3,5-dihydroxyoxan-2-yl]methoxy}sulfonateGenerator
{[4-(benzyloxy)-6-[({3-[3-butyl-7-(dimethylamino)-3-ethyl-4-hydroxy-1,1-dioxo-2,3,4,5-tetrahydro-1-benzothiepin-5-yl]phenyl}-C-hydroxycarbonimidoyl)amino]-3,5-dihydroxyoxan-2-yl]methoxy}sulphonateGenerator
{[4-(benzyloxy)-6-[({3-[3-butyl-7-(dimethylamino)-3-ethyl-4-hydroxy-1,1-dioxo-2,3,4,5-tetrahydro-1-benzothiepin-5-yl]phenyl}-C-hydroxycarbonimidoyl)amino]-3,5-dihydroxyoxan-2-yl]methoxy}sulphonic acidGenerator
Chemical FormulaC38H51N3O12S2
Average Molecular Weight805.96
Monoisotopic Molecular Weight805.291416442
IUPAC Name{[4-(benzyloxy)-6-[({3-[3-butyl-7-(dimethylamino)-3-ethyl-4-hydroxy-1,1-dioxo-2,3,4,5-tetrahydro-1lambda6-benzothiepin-5-yl]phenyl}carbamoyl)amino]-3,5-dihydroxyoxan-2-yl]methoxy}sulfonic acid
Traditional Name[4-(benzyloxy)-6-[({3-[3-butyl-7-(dimethylamino)-3-ethyl-4-hydroxy-1,1-dioxo-4,5-dihydro-2H-1lambda6-benzothiepin-5-yl]phenyl}carbamoyl)amino]-3,5-dihydroxyoxan-2-yl]methoxysulfonic acid
CAS Registry NumberNot Available
SMILES
CCCCC1(CC)CS(=O)(=O)C2=C(C=C(C=C2)N(C)C)C(C1O)C1=CC(NC(=O)NC2OC(COS(O)(=O)=O)C(O)C(OCC3=CC=CC=C3)C2O)=CC=C1
InChI Identifier
InChI=1S/C38H51N3O12S2/c1-5-7-18-38(6-2)23-54(46,47)30-17-16-27(41(3)4)20-28(30)31(35(38)44)25-14-11-15-26(19-25)39-37(45)40-36-33(43)34(51-21-24-12-9-8-10-13-24)32(42)29(53-36)22-52-55(48,49)50/h8-17,19-20,29,31-36,42-44H,5-7,18,21-23H2,1-4H3,(H2,39,40,45)(H,48,49,50)
InChI KeyULVBLFBUTQMAGZ-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as hexoses. These are monosaccharides in which the sugar unit is a is a six-carbon containing moeity.
KingdomOrganic compounds
Super ClassOrganic oxygen compounds
ClassOrganooxygen compounds
Sub ClassCarbohydrates and carbohydrate conjugates
Direct ParentHexoses
Alternative Parents
Substituents
  • Hexose monosaccharide
  • Benzothiepin
  • Monosaccharide sulfate
  • N-phenylurea
  • Benzylether
  • Dialkylarylamine
  • Tertiary aliphatic/aromatic amine
  • Benzenoid
  • Sulfuric acid ester
  • Alkyl sulfate
  • Sulfate-ester
  • Sulfuric acid monoester
  • Oxane
  • Monocyclic benzene moiety
  • Sulfone
  • Organic sulfuric acid or derivatives
  • Urea
  • Tertiary amine
  • Secondary alcohol
  • Carbonic acid derivative
  • Oxacycle
  • Organoheterocyclic compound
  • Ether
  • Dialkyl ether
  • Organic nitrogen compound
  • Organopnictogen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organonitrogen compound
  • Carbonyl group
  • Amine
  • Alcohol
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP1.98ALOGPS
logP2.88ChemAxon
logS-3.8ALOGPS
pKa (Strongest Acidic)-1.9ChemAxon
pKa (Strongest Basic)2.23ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count12ChemAxon
Hydrogen Donor Count6ChemAxon
Polar Surface Area221.26 ŲChemAxon
Rotatable Bond Count14ChemAxon
Refractivity205.73 m³·mol⁻¹ChemAxon
Polarizability84 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+269.57232859911
AllCCS[M+H-H2O]+269.37532859911
AllCCS[M+Na]+269.74732859911
AllCCS[M+NH4]+269.71432859911
AllCCS[M-H]-250.01432859911
AllCCS[M+Na-2H]-254.81132859911
AllCCS[M+HCOO]-260.14232859911
DeepCCS[M+H]+272.97930932474
DeepCCS[M-H]-271.08330932474
DeepCCS[M-2H]-304.93330932474
DeepCCS[M+Na]+278.95530932474

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
VolixibatCCCCC1(CC)CS(=O)(=O)C2=C(C=C(C=C2)N(C)C)C(C1O)C1=CC(NC(=O)NC2OC(COS(O)(=O)=O)C(O)C(OCC3=CC=CC=C3)C2O)=CC=C18883.5Standard polar33892256
VolixibatCCCCC1(CC)CS(=O)(=O)C2=C(C=C(C=C2)N(C)C)C(C1O)C1=CC(NC(=O)NC2OC(COS(O)(=O)=O)C(O)C(OCC3=CC=CC=C3)C2O)=CC=C14078.6Standard non polar33892256
VolixibatCCCCC1(CC)CS(=O)(=O)C2=C(C=C(C=C2)N(C)C)C(C1O)C1=CC(NC(=O)NC2OC(COS(O)(=O)=O)C(O)C(OCC3=CC=CC=C3)C2O)=CC=C16847.8Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Volixibat GC-MS (TMS_1_1) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Volixibat GC-MS (TMS_1_2) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Volixibat GC-MS (TMS_1_3) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Volixibat GC-MS (TMS_1_4) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Volixibat GC-MS (TMS_1_5) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Volixibat GC-MS (TMS_1_6) - 70eV, PositiveNot Available2021-11-05Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]