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Record Information

Version

5.0

Status

Predicted

Creation Date

2021-09-12 01:56:23 UTC

Update Date

2022-11-30 19:53:46 UTC

HMDB ID

HMDB0260543

Secondary Accession Numbers

None

Metabolite Identification

Common Name

MG(0:0/18:1(12Z)-O(9S,10R)/0:0)

Description

MG(0:0/18:1(12Z)-O(9S,10R)/0:0) is an oxidized monoacyglycerol (MG). Oxidized monoacyglycerols are glycerolipids in which the fatty acyl chain has undergone oxidation. As all oxidized lipids, oxidized monoacyglycerols belong to a group of biomolecules that have a role as signaling molecules. The biosynthesis of oxidized lipids is mediated by several enzymatic families, including cyclooxygenases (COX), lipoxygenases (LOX) and cytochrome P450s (CYP). Non-enzymatically oxidized lipids are produced by uncontrolled oxidation through free radicals and are considered harmful to human health (PMID: 33329396 ). As is the case with other lipids, monoacyglycerols can be substituted by different fatty acids, with varying lengths, saturation and degrees of oxidation attached at the C-1, C-2 and C-3 positions. Lipids are ubiquitous in nature and are key components of the lipid bilayer of cells, as well as being involved in metabolism and signaling. Similarly to what occurs with lipids, the fatty acid distribution at the C-1 and C-2 positions of glycerol within oxidized lipids is continually in flux, owing to lipid degradation and the continuous lipid remodeling that occurs while these molecules are in membranes. Oxidized MGs can be synthesized via three different routes. In one route, the oxidized MG is synthetized de novo following the same mechanisms as for MGs but incorporating an oxidized acyl chain (PMID: 33329396 ). An alternative is the transacylation of the non-oxidized acyl chains with an oxidized acylCoA (PMID: 33329396 ). The third pathway results from the oxidation of the acyl chain while still attached to the MG backbone, mainly through the action of LOX (PMID: 33329396 ).

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

MG(0:0/18:1(12Z)-O(9S,10R)/0:0)
  Mrv1652309122103562D          

 26 26  0  0  1  0            999 V2000
   24.1452   -6.4803    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.1839   -7.0354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.2225   -6.4805    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.1451   -5.3702    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.2610   -7.0354    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.1836   -8.1457    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   22.4691   -8.5581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.4691   -9.3296    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.7550   -8.1450    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.0409   -8.5581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.3267   -8.1450    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.6126   -8.5581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.8984   -8.1450    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.1843   -8.5581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.4701   -8.1450    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.7560   -8.5581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.7560   -9.3296    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.0419   -8.1450    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.3277   -8.5581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.6136   -8.1450    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.7886   -8.1450    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.0744   -8.5581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.3603   -8.1450    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.6462   -8.5581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.9320   -8.1450    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2179   -8.5581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  2  6  1  0  0  0  0
  3  2  1  0  0  0  0
  4  1  1  0  0  0  0
  5  3  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
M  END

HMDB0260543
     RDKit          3D
MG(0:0/18:1(12Z)-O(9S,10R)/0:0)
 64 64  0  0  0  0  0  0  0  0999 V2000
  -10.3862   -0.0956   -0.1636 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1376    0.6811    0.2476 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2457   -0.1412    1.1153 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0341    0.6361    1.5302 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2603    1.0556    0.3063 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0479    1.8183    0.6322 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8587    1.4229    0.2962 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5637    0.1909   -0.4368 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6544   -0.6445    0.4648 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2089   -1.8795    0.0140 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2775   -0.8558   -0.1246 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1446   -0.6829    0.8291 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1737   -0.9262    0.0734 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2832   -0.7435    1.0631 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6624   -0.9372    0.4386 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7933   -2.2983   -0.1203 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0969   -2.6554   -0.7503 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5367   -1.8802   -1.9326 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7568   -0.4434   -1.7598 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1483    0.4439   -2.4524 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.6549    0.0813   -0.8199 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.8656    1.4556   -0.6544 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3008    1.8259   -1.0252 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5341    1.4876   -2.3616 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.5839    1.8625    0.7568 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7972    3.2469    0.9243 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7891    0.4445   -1.0568 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.1336   -0.1497    0.6460 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0432   -1.0846   -0.5281 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5993    0.8460   -0.7292 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4538    1.6175    0.7176 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9118   -1.0345    0.5351 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7770   -0.5646    2.0042 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4167   -0.0110    2.2122 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3564    1.4860    2.1614 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9450    1.8121   -0.2040 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1618    0.2134   -0.3541 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1974    2.7806    1.1969 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0067    2.0472    0.5749 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4015   -0.3885   -0.8127 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9928    0.4962   -1.3787 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7887   -0.4579    1.5285 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1025   -0.5862   -1.1843 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2079   -1.2994    1.7231 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0889    0.3927    1.1709 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2617   -0.2351   -0.7801 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1448   -1.9660   -0.3650 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2006   -1.4632    1.8961 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1829    0.2981    1.4536 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7924   -0.1467   -0.2956 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3862   -0.8504    1.2964 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6202   -3.0508    0.7032 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9838   -2.5397   -0.8724 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9163   -2.6151    0.0223 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0385   -3.7623   -1.0073 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7965   -2.0165   -2.7694 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4795   -2.3549   -2.3417 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2329    2.0551   -1.3378 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9752    1.2545   -0.3572 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4833    2.8956   -0.8587 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9802    0.6257   -2.4592 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2769    1.2815    1.4089 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5446    1.6137    1.0245 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7094    3.3952    1.3263 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  2  0
 19 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 22 25  1  0
 25 26  1  0
 11  9  1  0
  1 27  1  0
  1 28  1  0
  1 29  1  0
  2 30  1  0
  2 31  1  0
  3 32  1  0
  3 33  1  0
  4 34  1  0
  4 35  1  0
  5 36  1  0
  5 37  1  0
  6 38  1  0
  7 39  1  0
  8 40  1  0
  8 41  1  0
  9 42  1  0
 11 43  1  0
 12 44  1  0
 12 45  1  0
 13 46  1  0
 13 47  1  0
 14 48  1  0
 14 49  1  0
 15 50  1  0
 15 51  1  0
 16 52  1  0
 16 53  1  0
 17 54  1  0
 17 55  1  0
 18 56  1  0
 18 57  1  0
 22 58  1  0
 23 59  1  0
 23 60  1  0
 24 61  1  0
 25 62  1  0
 25 63  1  0
 26 64  1  0
M  END

MG(0:0/18:1(12Z)-O(9S,10R)/0:0)
  Mrv1652309122103562D          

 26 26  0  0  1  0            999 V2000
   24.1452   -6.4803    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.1839   -7.0354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.2225   -6.4805    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.1451   -5.3702    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.2610   -7.0354    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.1836   -8.1457    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   22.4691   -8.5581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.4691   -9.3296    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.7550   -8.1450    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.0409   -8.5581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.3267   -8.1450    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.6126   -8.5581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.8984   -8.1450    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.1843   -8.5581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.4701   -8.1450    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.7560   -8.5581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.7560   -9.3296    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.0419   -8.1450    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.3277   -8.5581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.6136   -8.1450    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.7886   -8.1450    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.0744   -8.5581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.3603   -8.1450    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.6462   -8.5581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.9320   -8.1450    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2179   -8.5581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  2  6  1  0  0  0  0
  3  2  1  0  0  0  0
  4  1  1  0  0  0  0
  5  3  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0260543

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCC\C=C/CC1OC1CCCCCCCC(=O)OC(CO)CO

> <INCHI_IDENTIFIER>
InChI=1S/C21H38O5/c1-2-3-4-5-7-10-13-19-20(26-19)14-11-8-6-9-12-15-21(24)25-18(16-22)17-23/h7,10,18-20,22-23H,2-6,8-9,11-17H2,1H3/b10-7-

> <INCHI_KEY>
IMLPKJSHELQVKM-YFHOEESVSA-N

> <FORMULA>
C21H38O5

> <MOLECULAR_WEIGHT>
370.53

> <EXACT_MASS>
370.271924324

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
64

> <JCHEM_AVERAGE_POLARIZABILITY>
45.13424081465634

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
1,3-dihydroxypropan-2-yl 8-{3-[(2Z)-oct-2-en-1-yl]oxiran-2-yl}octanoate

> <ALOGPS_LOGP>
4.74

> <JCHEM_LOGP>
4.309336991333334

> <ALOGPS_LOGS>
-4.66

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.979619369539545

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.278372843553583

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9827691981262365

> <JCHEM_POLAR_SURFACE_AREA>
79.28999999999999

> <JCHEM_REFRACTIVITY>
103.94699999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
18

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
8.04e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
1,3-dihydroxypropan-2-yl 8-{3-[(2Z)-oct-2-en-1-yl]oxiran-2-yl}octanoate

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0260543
     RDKit          3D
MG(0:0/18:1(12Z)-O(9S,10R)/0:0)
 64 64  0  0  0  0  0  0  0  0999 V2000
  -10.3862   -0.0956   -0.1636 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1376    0.6811    0.2476 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2457   -0.1412    1.1153 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0341    0.6361    1.5302 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2603    1.0556    0.3063 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0479    1.8183    0.6322 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8587    1.4229    0.2962 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5637    0.1909   -0.4368 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6544   -0.6445    0.4648 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2089   -1.8795    0.0140 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2775   -0.8558   -0.1246 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1446   -0.6829    0.8291 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1737   -0.9262    0.0734 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2832   -0.7435    1.0631 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6624   -0.9372    0.4386 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7933   -2.2983   -0.1203 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0969   -2.6554   -0.7503 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5367   -1.8802   -1.9326 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7568   -0.4434   -1.7598 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1483    0.4439   -2.4524 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.6549    0.0813   -0.8199 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.8656    1.4556   -0.6544 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3008    1.8259   -1.0252 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5341    1.4876   -2.3616 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.5839    1.8625    0.7568 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7972    3.2469    0.9243 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7891    0.4445   -1.0568 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.1336   -0.1497    0.6460 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0432   -1.0846   -0.5281 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5993    0.8460   -0.7292 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4538    1.6175    0.7176 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9118   -1.0345    0.5351 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7770   -0.5646    2.0042 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4167   -0.0110    2.2122 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3564    1.4860    2.1614 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9450    1.8121   -0.2040 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1618    0.2134   -0.3541 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1974    2.7806    1.1969 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0067    2.0472    0.5749 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4015   -0.3885   -0.8127 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9928    0.4962   -1.3787 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7887   -0.4579    1.5285 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1025   -0.5862   -1.1843 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2079   -1.2994    1.7231 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0889    0.3927    1.1709 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2617   -0.2351   -0.7801 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1448   -1.9660   -0.3650 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2006   -1.4632    1.8961 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1829    0.2981    1.4536 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7924   -0.1467   -0.2956 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3862   -0.8504    1.2964 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6202   -3.0508    0.7032 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9838   -2.5397   -0.8724 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9163   -2.6151    0.0223 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0385   -3.7623   -1.0073 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7965   -2.0165   -2.7694 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4795   -2.3549   -2.3417 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2329    2.0551   -1.3378 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9752    1.2545   -0.3572 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4833    2.8956   -0.8587 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9802    0.6257   -2.4592 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2769    1.2815    1.4089 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5446    1.6137    1.0245 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7094    3.3952    1.3263 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  2  0
 19 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 22 25  1  0
 25 26  1  0
 11  9  1  0
  1 27  1  0
  1 28  1  0
  1 29  1  0
  2 30  1  0
  2 31  1  0
  3 32  1  0
  3 33  1  0
  4 34  1  0
  4 35  1  0
  5 36  1  0
  5 37  1  0
  6 38  1  0
  7 39  1  0
  8 40  1  0
  8 41  1  0
  9 42  1  0
 11 43  1  0
 12 44  1  0
 12 45  1  0
 13 46  1  0
 13 47  1  0
 14 48  1  0
 14 49  1  0
 15 50  1  0
 15 51  1  0
 16 52  1  0
 16 53  1  0
 17 54  1  0
 17 55  1  0
 18 56  1  0
 18 57  1  0
 22 58  1  0
 23 59  1  0
 23 60  1  0
 24 61  1  0
 25 62  1  0
 25 63  1  0
 26 64  1  0
M  END

HEADER    PROTEIN                                 12-SEP-21   NONE
TITLE     NULL                                                        
COMPND    MOLECULE: MG(0:0/18:1(12Z)-O(9S,10R)/0:0)                   
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-SEP-21         0                                  
HETATM    1  C   UNK     0      45.071 -12.097   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      43.277 -13.133   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      41.482 -12.097   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      45.071 -10.024   0.000  0.00  0.00           O+0
HETATM    5  O   UNK     0      39.687 -13.133   0.000  0.00  0.00           O+0
HETATM    6  O   UNK     0      43.276 -15.205   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0      41.942 -15.975   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      41.942 -17.415   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      40.609 -15.204   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      39.276 -15.975   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      37.943 -15.204   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      36.610 -15.975   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      35.277 -15.204   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      33.944 -15.975   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      32.611 -15.204   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      31.278 -15.975   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      31.278 -17.415   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0      29.945 -15.204   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      28.612 -15.975   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      27.279 -15.204   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      25.739 -15.204   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      24.406 -15.975   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      23.073 -15.204   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      21.740 -15.975   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      20.406 -15.204   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      19.073 -15.975   0.000  0.00  0.00           C+0
CONECT    1    2    4                                                       
CONECT    2    1    6    3                                                  
CONECT    3    2    5                                                       
CONECT    4    1                                                            
CONECT    5    3                                                            
CONECT    6    2    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16   18                                                       
CONECT   18   16   17   19                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25                                                            
MASTER        0    0    0    0    0    0    0    0   26    0   52    0
END

COMPND    HMDB0260543
HETATM    1  C1  UNL     1     -10.386  -0.096  -0.164  1.00  0.00           C  
HETATM    2  C2  UNL     1      -9.138   0.681   0.248  1.00  0.00           C  
HETATM    3  C3  UNL     1      -8.246  -0.141   1.115  1.00  0.00           C  
HETATM    4  C4  UNL     1      -7.034   0.636   1.530  1.00  0.00           C  
HETATM    5  C5  UNL     1      -6.260   1.056   0.306  1.00  0.00           C  
HETATM    6  C6  UNL     1      -5.048   1.818   0.632  1.00  0.00           C  
HETATM    7  C7  UNL     1      -3.859   1.423   0.296  1.00  0.00           C  
HETATM    8  C8  UNL     1      -3.564   0.191  -0.437  1.00  0.00           C  
HETATM    9  C9  UNL     1      -2.654  -0.645   0.465  1.00  0.00           C  
HETATM   10  O1  UNL     1      -2.209  -1.879   0.014  1.00  0.00           O  
HETATM   11  C10 UNL     1      -1.278  -0.856  -0.125  1.00  0.00           C  
HETATM   12  C11 UNL     1      -0.145  -0.683   0.829  1.00  0.00           C  
HETATM   13  C12 UNL     1       1.174  -0.926   0.073  1.00  0.00           C  
HETATM   14  C13 UNL     1       2.283  -0.743   1.063  1.00  0.00           C  
HETATM   15  C14 UNL     1       3.662  -0.937   0.439  1.00  0.00           C  
HETATM   16  C15 UNL     1       3.793  -2.298  -0.120  1.00  0.00           C  
HETATM   17  C16 UNL     1       5.097  -2.655  -0.750  1.00  0.00           C  
HETATM   18  C17 UNL     1       5.537  -1.880  -1.933  1.00  0.00           C  
HETATM   19  C18 UNL     1       5.757  -0.443  -1.760  1.00  0.00           C  
HETATM   20  O2  UNL     1       5.148   0.444  -2.452  1.00  0.00           O  
HETATM   21  O3  UNL     1       6.655   0.081  -0.820  1.00  0.00           O  
HETATM   22  C19 UNL     1       6.866   1.456  -0.654  1.00  0.00           C  
HETATM   23  C20 UNL     1       8.301   1.826  -1.025  1.00  0.00           C  
HETATM   24  O4  UNL     1       8.534   1.488  -2.362  1.00  0.00           O  
HETATM   25  C21 UNL     1       6.584   1.862   0.757  1.00  0.00           C  
HETATM   26  O5  UNL     1       6.797   3.247   0.924  1.00  0.00           O  
HETATM   27  H1  UNL     1     -10.789   0.445  -1.057  1.00  0.00           H  
HETATM   28  H2  UNL     1     -11.134  -0.150   0.646  1.00  0.00           H  
HETATM   29  H3  UNL     1     -10.043  -1.085  -0.528  1.00  0.00           H  
HETATM   30  H4  UNL     1      -8.599   0.846  -0.729  1.00  0.00           H  
HETATM   31  H5  UNL     1      -9.454   1.617   0.718  1.00  0.00           H  
HETATM   32  H6  UNL     1      -7.912  -1.034   0.535  1.00  0.00           H  
HETATM   33  H7  UNL     1      -8.777  -0.565   2.004  1.00  0.00           H  
HETATM   34  H8  UNL     1      -6.417  -0.011   2.212  1.00  0.00           H  
HETATM   35  H9  UNL     1      -7.356   1.486   2.161  1.00  0.00           H  
HETATM   36  H10 UNL     1      -6.945   1.812  -0.204  1.00  0.00           H  
HETATM   37  H11 UNL     1      -6.162   0.213  -0.354  1.00  0.00           H  
HETATM   38  H12 UNL     1      -5.197   2.781   1.197  1.00  0.00           H  
HETATM   39  H13 UNL     1      -3.007   2.047   0.575  1.00  0.00           H  
HETATM   40  H14 UNL     1      -4.401  -0.389  -0.813  1.00  0.00           H  
HETATM   41  H15 UNL     1      -2.993   0.496  -1.379  1.00  0.00           H  
HETATM   42  H16 UNL     1      -2.789  -0.458   1.528  1.00  0.00           H  
HETATM   43  H17 UNL     1      -1.102  -0.586  -1.184  1.00  0.00           H  
HETATM   44  H18 UNL     1      -0.208  -1.299   1.723  1.00  0.00           H  
HETATM   45  H19 UNL     1      -0.089   0.393   1.171  1.00  0.00           H  
HETATM   46  H20 UNL     1       1.262  -0.235  -0.780  1.00  0.00           H  
HETATM   47  H21 UNL     1       1.145  -1.966  -0.365  1.00  0.00           H  
HETATM   48  H22 UNL     1       2.201  -1.463   1.896  1.00  0.00           H  
HETATM   49  H23 UNL     1       2.183   0.298   1.454  1.00  0.00           H  
HETATM   50  H24 UNL     1       3.792  -0.147  -0.296  1.00  0.00           H  
HETATM   51  H25 UNL     1       4.386  -0.850   1.296  1.00  0.00           H  
HETATM   52  H26 UNL     1       3.620  -3.051   0.703  1.00  0.00           H  
HETATM   53  H27 UNL     1       2.984  -2.540  -0.872  1.00  0.00           H  
HETATM   54  H28 UNL     1       5.916  -2.615   0.022  1.00  0.00           H  
HETATM   55  H29 UNL     1       5.039  -3.762  -1.007  1.00  0.00           H  
HETATM   56  H30 UNL     1       4.796  -2.017  -2.769  1.00  0.00           H  
HETATM   57  H31 UNL     1       6.479  -2.355  -2.342  1.00  0.00           H  
HETATM   58  H32 UNL     1       6.233   2.055  -1.338  1.00  0.00           H  
HETATM   59  H33 UNL     1       8.975   1.254  -0.357  1.00  0.00           H  
HETATM   60  H34 UNL     1       8.483   2.896  -0.859  1.00  0.00           H  
HETATM   61  H35 UNL     1       8.980   0.626  -2.459  1.00  0.00           H  
HETATM   62  H36 UNL     1       7.277   1.282   1.409  1.00  0.00           H  
HETATM   63  H37 UNL     1       5.545   1.614   1.024  1.00  0.00           H  
HETATM   64  H38 UNL     1       7.709   3.395   1.326  1.00  0.00           H  
CONECT    1    2   27   28   29
CONECT    2    3   30   31
CONECT    3    4   32   33
CONECT    4    5   34   35
CONECT    5    6   36   37
CONECT    6    7    7   38
CONECT    7    8   39
CONECT    8    9   40   41
CONECT    9   10   11   42
CONECT   10   11
CONECT   11   12   43
CONECT   12   13   44   45
CONECT   13   14   46   47
CONECT   14   15   48   49
CONECT   15   16   50   51
CONECT   16   17   52   53
CONECT   17   18   54   55
CONECT   18   19   56   57
CONECT   19   20   20   21
CONECT   21   22
CONECT   22   23   25   58
CONECT   23   24   59   60
CONECT   24   61
CONECT   25   26   62   63
CONECT   26   64
END

HMDB0260543
     RDKit          3D
MG(0:0/18:1(12Z)-O(9S,10R)/0:0)
 64 64  0  0  0  0  0  0  0  0999 V2000
  -10.3862   -0.0956   -0.1636 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1376    0.6811    0.2476 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2457   -0.1412    1.1153 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0341    0.6361    1.5302 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2603    1.0556    0.3063 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0479    1.8183    0.6322 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8587    1.4229    0.2962 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5637    0.1909   -0.4368 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6544   -0.6445    0.4648 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2089   -1.8795    0.0140 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2775   -0.8558   -0.1246 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1446   -0.6829    0.8291 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1737   -0.9262    0.0734 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2832   -0.7435    1.0631 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6624   -0.9372    0.4386 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7933   -2.2983   -0.1203 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0969   -2.6554   -0.7503 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5367   -1.8802   -1.9326 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7568   -0.4434   -1.7598 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1483    0.4439   -2.4524 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.6549    0.0813   -0.8199 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.8656    1.4556   -0.6544 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3008    1.8259   -1.0252 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5341    1.4876   -2.3616 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.5839    1.8625    0.7568 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7972    3.2469    0.9243 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7891    0.4445   -1.0568 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.1336   -0.1497    0.6460 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0432   -1.0846   -0.5281 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5993    0.8460   -0.7292 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4538    1.6175    0.7176 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9118   -1.0345    0.5351 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7770   -0.5646    2.0042 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4167   -0.0110    2.2122 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3564    1.4860    2.1614 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9450    1.8121   -0.2040 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1618    0.2134   -0.3541 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1974    2.7806    1.1969 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0067    2.0472    0.5749 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4015   -0.3885   -0.8127 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9928    0.4962   -1.3787 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7887   -0.4579    1.5285 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1025   -0.5862   -1.1843 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2079   -1.2994    1.7231 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0889    0.3927    1.1709 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2617   -0.2351   -0.7801 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1448   -1.9660   -0.3650 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2006   -1.4632    1.8961 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1829    0.2981    1.4536 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7924   -0.1467   -0.2956 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3862   -0.8504    1.2964 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6202   -3.0508    0.7032 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9838   -2.5397   -0.8724 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9163   -2.6151    0.0223 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0385   -3.7623   -1.0073 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7965   -2.0165   -2.7694 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4795   -2.3549   -2.3417 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2329    2.0551   -1.3378 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9752    1.2545   -0.3572 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4833    2.8956   -0.8587 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9802    0.6257   -2.4592 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2769    1.2815    1.4089 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5446    1.6137    1.0245 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7094    3.3952    1.3263 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
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 26 64  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
1,3-Dihydroxypropan-2-yl 8-{3-[(2Z)-oct-2-en-1-yl]oxiran-2-yl}octanoic acid	HMDB

Chemical Formula

C₂₁H₃₈O₅

Average Molecular Weight

370.53

Monoisotopic Molecular Weight

370.271924324

IUPAC Name

1,3-dihydroxypropan-2-yl 8-{3-[(2Z)-oct-2-en-1-yl]oxiran-2-yl}octanoate

Traditional Name

1,3-dihydroxypropan-2-yl 8-{3-[(2Z)-oct-2-en-1-yl]oxiran-2-yl}octanoate

CAS Registry Number

Not Available

SMILES

CCCCC\C=C/CC1OC1CCCCCCCC(=O)OC(CO)CO

InChI Identifier

InChI=1S/C21H38O5/c1-2-3-4-5-7-10-13-19-20(26-19)14-11-8-6-9-12-15-21(24)25-18(16-22)17-23/h7,10,18-20,22-23H,2-6,8-9,11-17H2,1H3/b10-7-

InChI Key

IMLPKJSHELQVKM-YFHOEESVSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 2-monoacylglycerols. These are monoacylglycerols containing a glycerol acylated at the 2-position.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Glycerolipids

Sub Class

Monoradylglycerols

Direct Parent

2-monoacylglycerols

Alternative Parents

Substituents

2-acyl-sn-glycerol
Fatty acid ester
Fatty acyl
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Ether
Oxirane
Dialkyl ether
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Ontology

Not Available

Endogenous (HMDB: HMDB0260543)

Process

Not Available

Role

Not Available

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
logP	4.74	ALOGPS
logP	4.31	ChemAxon
logS	-4.7	ALOGPS
pKa (Strongest Acidic)	14.28	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	79.29 Å²	ChemAxon
Rotatable Bond Count	18	ChemAxon
Refractivity	103.95 m³·mol⁻¹	ChemAxon
Polarizability	45.13 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
AllCCS	[M+H]+	199.991	32859911
AllCCS	[M+H-H2O]+	197.623	32859911
AllCCS	[M+Na]+	202.795	32859911
AllCCS	[M+NH4]+	202.171	32859911
AllCCS	[M-H]-	196.159	32859911
AllCCS	[M+Na-2H]-	198.036	32859911
AllCCS	[M+HCOO]-	200.258	32859911
DeepCCS	[M+H]+	199.358	30932474
DeepCCS	[M-H]-	197.001	30932474
DeepCCS	[M-2H]-	229.886	30932474
DeepCCS	[M+Na]+	205.53	30932474

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022.	8.16 minutes	32390414
Predicted by Siyang on May 30, 2022	18.4436 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	0.98 minutes	32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	3286.0 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	330.3 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	209.8 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	192.2 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	615.2 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	886.9 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	642.2 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	136.7 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	1766.3 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	623.8 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	1887.2 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	624.4 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	481.9 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	387.5 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	394.1 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	8.0 seconds	40023050

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
MG(0:0/18:1(12Z)-O(9S,10R)/0:0)	CCCCC\C=C/CC1OC1CCCCCCCC(=O)OC(CO)CO	2808.9	Standard polar	33892256
MG(0:0/18:1(12Z)-O(9S,10R)/0:0)	CCCCC\C=C/CC1OC1CCCCCCCC(=O)OC(CO)CO	2537.5	Standard non polar	33892256
MG(0:0/18:1(12Z)-O(9S,10R)/0:0)	CCCCC\C=C/CC1OC1CCCCCCCC(=O)OC(CO)CO	2759.4	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - MG(0:0/18:1(12Z)-O(9S,10R)/0:0) GC-MS (Non-derivatized) - 70eV, Positive	splash10-004i-9570000000-857c24f149acf824ffea	2021-09-24	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - MG(0:0/18:1(12Z)-O(9S,10R)/0:0) GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - MG(0:0/18:1(12Z)-O(9S,10R)/0:0) GC-MS (TMS_1_1) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - MG(0:0/18:1(12Z)-O(9S,10R)/0:0) GC-MS (TMS_2_1) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - MG(0:0/18:1(12Z)-O(9S,10R)/0:0) GC-MS (TBDMS_1_1) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - MG(0:0/18:1(12Z)-O(9S,10R)/0:0) GC-MS (TBDMS_2_1) - 70eV, Positive	Not Available	2021-11-05	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

156963900

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Hajeyah AA, Griffiths WJ, Wang Y, Finch AJ, O'Donnell VB: The Biosynthesis of Enzymatically Oxidized Lipids. Front Endocrinol (Lausanne). 2020 Nov 19;11:591819. doi: 10.3389/fendo.2020.591819. eCollection 2020. [PubMed:33329396 ]

Showing metabocard for MG(0:0/18:1(12Z)-O(9S,10R)/0:0) (HMDB0260543)

MOL for HMDB0260543 (MG(0:0/18:1(12Z)-O(9S,10R)/0:0))

3D MOL for HMDB0260543 (MG(0:0/18:1(12Z)-O(9S,10R)/0:0))

3D SDF for HMDB0260543 (MG(0:0/18:1(12Z)-O(9S,10R)/0:0))

3D-SDF for HMDB0260543 (MG(0:0/18:1(12Z)-O(9S,10R)/0:0))

PDB for HMDB0260543 (MG(0:0/18:1(12Z)-O(9S,10R)/0:0))

3D PDB for HMDB0260543 (MG(0:0/18:1(12Z)-O(9S,10R)/0:0))

SMILES for HMDB0260543 (MG(0:0/18:1(12Z)-O(9S,10R)/0:0))

INCHI for HMDB0260543 (MG(0:0/18:1(12Z)-O(9S,10R)/0:0))

Structure for HMDB0260543 (MG(0:0/18:1(12Z)-O(9S,10R)/0:0))

3D Structure for HMDB0260543 (MG(0:0/18:1(12Z)-O(9S,10R)/0:0))

Predicted Collision Cross Sections

Predicted Retention Times

Underivatized

Predicted Kovats Retention Indices

Underivatized

GC-MS Spectra