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Showing metabocard for PI(22:5(7Z,10Z,13Z,16Z,19Z)/5-iso PGF2VI) (HMDB0278253)

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Record Information
Version5.0
StatusPredicted
Creation Date2021-09-13 09:35:39 UTC
Update Date2022-11-30 20:01:39 UTC
HMDB IDHMDB0278253
Secondary Accession NumbersNone
Metabolite Identification
Common NamePI(22:5(7Z,10Z,13Z,16Z,19Z)/5-iso PGF2VI)
DescriptionPI(22:5(7Z,10Z,13Z,16Z,19Z)/5-iso PGF2VI) is an oxidized phosphatidylinositol (PI). Phosphatidylinositols are important lipids, both as a key membrane constituent and as a participant in essential metabolic processes, both directly and via a number of metabolites. Phosphatidylinositols are acidic (anionic) phospholipids that consist of a phosphatidic acid backbone, linked via the phosphate group to inositol (hexahydroxycyclohexane). Phosphatidylinositols can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. PI(22:5(7Z,10Z,13Z,16Z,19Z)/5-iso PGF2VI), in particular, consists of one chain of 7Z,10Z,13Z,16Z,19Z-docosapentaenoyl at the C-1 position and one chain of 5-iso Prostaglandin F2alpha-VI at the C-2 position. The inositol group that is part of every phosphatidylinositol lipid is covalently linked to the phosphate group that acts as a bridge to the lipid tail. In most organisms, the stereochemical form of this inositol is myo-D-inositol (with one axial hydroxyl in position 2 with the remainder equatorial), although other forms can be found in certain plant phosphatidylinositols. Phosphatidylinositol is especially abundant in brain tissue, where it can amount to 10% of the phospholipids, but it is present in all tissues and cell types. There is usually less of it than of phosphatidylcholine, phosphatidylethanolamine and phosphatidylserine. In animal tissues, phosphatidylinositol is the primary source of the arachidonic acid required for biosynthesis of eicosanoids, including prostaglandins, via the action of the enzyme phospholipase A2. Phosphatidylinositol can be phosphorylated by a number of different kinases that place the phosphate moiety on positions 4 and 5 of the inositol ring, although position 3 can also be phosphorylated by a specific kinase. Seven different isomers are known, but the most important in both quantitative and biological terms are phosphatidylinositol 4-phosphate and phosphatidylinositol 4,5-bisphosphate. Phosphatidylinositol and the phosphatidylinositol phosphates are the main source of diacylglycerols that serve as signaling molecules, via the action of phospholipase C enzymes. While most phospholipids have a saturated fatty acid on C-1 and an unsaturated fatty acid on C-2 of the glycerol backbone, the fatty acid distribution at the C-1 and C-2 positions of glycerol within phospholipids is continually in flux, owing to phospholipid degradation and the continuous phospholipid remodeling that occurs while these molecules are in membranes. PIs composed exclusively of non-phosphorylated inositol exhibit a net charge of -1 at physiological pH. Molecules with phosphorylated inositol (such as PIP, PIP2, PIP3, etc.) are termed polyphosphoinositides. The polyphosphoinositides are important intracellular transducers of signals emanating from the plasma membrane. The synthesis of PI involves CDP-activated 1,2-diacylglycerol condensation with myo-inositol.
Structure
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MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0278253 (PI(22:5(7Z,10Z,13Z,16Z,19Z)/5-iso PGF2VI))


  Mrv1652309132111362D          

 66 67  0  0  1  0            999 V2000
    0.8808   -2.9653    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2310   -2.1773    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7288   -1.4609    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -0.1989   -0.4647    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0277    0.2121    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9354    0.9731    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    1.9664    1.4833    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1750    1.3978    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4705    1.1691    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    5.1050    3.1225    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4159    3.9862    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8524    4.6375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.2441    4.2994    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0609    4.6119    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9046    4.3514    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6122    3.8216    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1461    3.1225    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7662    2.5082    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6037    2.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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 65 66  1  6  0  0  0
M  END
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3D MOL for HMDB0278253 (PI(22:5(7Z,10Z,13Z,16Z,19Z)/5-iso PGF2VI))

HMDB0278253
     RDKit          3D
PI(22:5(7Z,10Z,13Z,16Z,19Z)/5-iso PGF2VI)
145146  0  0  0  0  0  0  0  0999 V2000
   14.7229    4.2666   -0.7396 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.6322    2.7764   -0.4136 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.7782    2.0970   -1.0170 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.8462    1.1741   -1.9123 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.7411    0.5316   -2.6052 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.3790    0.9384   -2.3847 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.4600    0.1670   -1.8864 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.7287   -1.2618   -1.4755 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.8823   -2.1276   -2.2897 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.0119   -2.9978   -1.9223 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6290   -3.3745   -0.5904 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2253   -2.8536    0.6035 C   0  0  0  0  0  0  0  0  0  0  0  0
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  -15.5672    1.6040   -2.8922 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.8276   -0.6246   -2.7187 O   0  0  0  0  0  0  0  0  0  0  0  0
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   15.5673    4.6874   -0.1810 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.9415    4.3669   -1.8327 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.7955    2.7704    0.7241 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.6462    2.4287   -0.5870 H   0  0  0  0  0  0  0  0  0  0  0  0
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   14.9783    0.7609   -3.7376 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

3D SDF for HMDB0278253 (PI(22:5(7Z,10Z,13Z,16Z,19Z)/5-iso PGF2VI))


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M  END
> <DATABASE_ID>
HMDB0278253

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCC[C@@H](O)\C=C/[C@H]1[C@H](O)C[C@H](O)[C@H]2C\C=C/CC(=O)O[C@H](COC(=O)CCCCC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CC)COP(O)(=O)O[C@@H]([C@H](O)[C@@H](O)[C@@H]2O)[C@H](O)[C@@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C49H79O16P/c1-3-5-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-24-29-42(53)62-34-37-35-63-66(60,61)65-49-47(58)45(56)39(32-31-36(50)27-23-6-4-2)41(52)33-40(51)38(44(55)46(57)48(49)59)28-25-26-30-43(54)64-37/h5,7,9-10,12-13,15-16,18-19,25-26,31-32,36-41,44-52,55-59H,3-4,6,8,11,14,17,20-24,27-30,33-35H2,1-2H3,(H,60,61)/b7-5-,10-9-,13-12-,16-15-,19-18-,26-25-,32-31-/t36-,37-,38-,39+,40+,41-,44-,45?,46+,47-,48-,49-/m1/s1

> <INCHI_KEY>
MIDCNYFVOQUJBU-WTCRNGOLSA-N

> <FORMULA>
C49H79O16P

> <MOLECULAR_WEIGHT>
955.129

> <EXACT_MASS>
954.510573462

> <JCHEM_ACCEPTOR_COUNT>
12

> <JCHEM_ATOM_COUNT>
145

> <JCHEM_AVERAGE_POLARIZABILITY>
103.06370935999196

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
9

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
[(1R,6R,10Z,13R,14S,16R,17S,18R,19R,20R,21S,22R)-3,14,16,18,19,20,21,22-octahydroxy-17-[(1E,3R)-3-hydroxyoct-1-en-1-yl]-3,8-dioxo-2,4,7-trioxa-3lambda5-phosphabicyclo[11.6.3]docos-10-en-6-yl]methyl (7Z,10Z,13Z,16Z,19Z)-docosa-7,10,13,16,19-pentaenoate

> <ALOGPS_LOGP>
4.43

> <JCHEM_LOGP>
5.088492440333335

> <ALOGPS_LOGS>
-4.70

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
12.5607817461695

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.8332682321871303

> <JCHEM_PKA_STRONGEST_BASIC>
-2.8995082210359904

> <JCHEM_POLAR_SURFACE_AREA>
270.19999999999993

> <JCHEM_REFRACTIVITY>
258.05230000000006

> <JCHEM_ROTATABLE_BOND_COUNT>
24

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.89e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[(1R,6R,10Z,13R,14S,16R,17S,18R,19R,20R,21S,22R)-3,14,16,18,19,20,21,22-octahydroxy-17-[(1E,3R)-3-hydroxyoct-1-en-1-yl]-3,8-dioxo-2,4,7-trioxa-3lambda5-phosphabicyclo[11.6.3]docos-10-en-6-yl]methyl (7Z,10Z,13Z,16Z,19Z)-docosa-7,10,13,16,19-pentaenoate

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0278253 (PI(22:5(7Z,10Z,13Z,16Z,19Z)/5-iso PGF2VI))

HMDB0278253
     RDKit          3D
PI(22:5(7Z,10Z,13Z,16Z,19Z)/5-iso PGF2VI)
145146  0  0  0  0  0  0  0  0999 V2000
   14.7229    4.2666   -0.7396 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.6322    2.7764   -0.4136 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.7782    2.0970   -1.0170 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.8462    1.1741   -1.9123 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.7411    0.5316   -2.6052 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.3790    0.9384   -2.3847 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.4600    0.1670   -1.8864 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.7287   -1.2618   -1.4755 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.8823   -2.1276   -2.2897 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.0119   -2.9978   -1.9223 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6290   -3.3745   -0.5904 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2253   -2.8536    0.6035 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5742   -2.1758    1.5290 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1201   -1.8845    1.4089 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4334   -2.5497    2.5313 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7284   -1.9265    3.4415 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4695   -0.4958    3.5472 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0505   -0.0773    3.5662 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1632   -0.3576    2.4305 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9346   -1.7688    2.0409 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9523   -1.9008    0.8739 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6461   -1.3599    1.3248 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4236   -0.1425    1.2069 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6791   -2.1373    1.8606 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4344   -1.9568    2.3437 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5833   -1.4198    1.3243 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4854   -2.4094    0.1639 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6157   -2.4882   -0.6166 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3151   -1.0107   -0.9486 P   0  0  0  0  0  5  0  0  0  0  0  0
   -2.9666   -0.5585    0.3504 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2017    0.1085   -1.5411 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5600   -1.0933   -2.1244 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7010   -0.4111   -1.6201 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.8241    0.9901   -2.0893 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.9392    1.1655   -3.1563 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4846    2.0487   -1.0242 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.1462    3.1800   -1.8367 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6376    2.4596   -0.1998 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.1312    3.7322   -0.6373 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6033    2.3913    1.2607 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.3485    2.0624    1.9853 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1951    2.9164    1.6417 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0226    2.7143    2.1888 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4829    1.3680    2.4751 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4571    1.0775    1.4568 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2638    2.0875    1.1174 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2602   -0.1344    0.9023 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8000    1.6095    1.8524 C   0  0  1  0  0  0  0  0  0  0  0  0
   -7.9011    2.0389    1.1382 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5851    0.1382    1.8909 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6967   -0.7190    1.3912 C   0  0  1  0  0  0  0  0  0  0  0  0
   -8.9332   -0.3683    1.9464 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7838   -0.9473   -0.0860 C   0  0  2  0  0  0  0  0  0  0  0  0
   -9.0287   -1.7808   -0.3340 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0371   -1.3822   -1.0819 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0777   -0.0885   -1.7603 C   0  0  2  0  0  0  0  0  0  0  0  0
   -9.8729    1.0124   -0.9212 O   0  0  0  0  0  0  0  0  0  0  0  0
  -11.5061    0.0959   -2.3129 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.5089    0.0807   -1.1983 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.9065    0.2657   -1.7081 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.1134    1.5711   -2.4430 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.5672    1.6040   -2.8922 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5830   -1.7242   -0.5669 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.9878   -3.0716   -0.7479 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9731   -1.2419   -1.8429 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.8276   -0.6246   -2.7187 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.7598    4.7694   -0.5434 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.5673    4.6874   -0.1810 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.9415    4.3669   -1.8327 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.7955    2.7704    0.7241 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.6462    2.4287   -0.5870 H   0  0  0  0  0  0  0  0  0  0  0  0
   16.7687    2.4722   -0.6019 H   0  0  0  0  0  0  0  0  0  0  0  0
   16.9033    0.8527   -2.1640 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.8461   -0.5901   -2.5942 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.9783    0.7609   -3.7376 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.0820    1.9624   -2.6947 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.4542    0.5620   -1.7592 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.7579   -1.5671   -1.5744 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.5071   -1.2546   -0.3874 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.0584   -1.9676   -3.4072 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.4893   -3.5302   -2.7841 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.8270   -4.5473   -0.5672 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.4933   -3.4237   -0.5525 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.3079   -3.0369    0.8553 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.1092   -1.8054    2.4232 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.6807   -2.0945    0.4276 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9845   -0.7669    1.5225 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5268   -3.6362    2.5956 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2848   -2.5929    4.2166 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8674   -0.2169    4.5976 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0914    0.1602    2.8961 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6192   -0.4184    4.5533 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0516    1.0570    3.7000 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1677    0.1473    2.6473 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5459    0.2316    1.5431 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8336   -2.3049    1.6973 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4939   -2.2879    2.9487 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2753   -1.3305    0.0038 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8242   -2.9915    0.6497 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0017   -2.9348    2.6775 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3444   -1.2531    3.2120 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5568   -1.4236    1.8154 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3921   -3.4275    0.6503 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4414   -2.2729   -0.3991 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4818    1.0126   -1.2718 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5623   -0.4018   -0.5444 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8358    1.2387   -2.4879 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0415    0.4477   -3.8225 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5604    1.8318   -0.5124 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.4983    1.7874   -0.5336 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.5790    2.3512    3.0805 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3587    3.7253    0.9159 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3900    3.5792    2.4498 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.9512    1.9779    2.9156 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3023    2.8128    1.6045 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6441   -0.1954    1.4405 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4557   -0.1766    2.9926 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.0530   -1.1826   -3.5289 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
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 51 52  1  0
 51 53  1  0
 53 54  1  0
 54 55  2  0
 55 56  1  0
 56 57  1  0
 56 58  1  0
 58 59  1  0
 59 60  1  0
 60 61  1  0
 61 62  1  0
 53 63  1  0
 63 64  1  0
 63 65  1  0
 65 66  1  0
 47 26  1  0
 65 33  1  0
  1 67  1  0
  1 68  1  0
  1 69  1  0
  2 70  1  0
  2 71  1  0
  3 72  1  0
  4 73  1  0
  5 74  1  0
  5 75  1  0
  6 76  1  0
  7 77  1  0
  8 78  1  0
  8 79  1  0
  9 80  1  0
 10 81  1  0
 11 82  1  0
 11 83  1  0
 12 84  1  0
 13 85  1  0
 14 86  1  0
 14 87  1  0
 15 88  1  0
 16 89  1  0
 17 90  1  0
 17 91  1  0
 18 92  1  0
 18 93  1  0
 19 94  1  0
 19 95  1  0
 20 96  1  0
 20 97  1  0
 21 98  1  0
 21 99  1  0
 25100  1  0
 25101  1  0
 26102  1  1
 27103  1  0
 27104  1  0
 31105  1  0
 33106  1  1
 34107  1  6
 35108  1  0
 36109  1  1
 37110  1  0
 38111  1  6
 39112  1  0
 40113  1  1
 41114  1  0
 41115  1  0
 42116  1  0
 43117  1  0
 44118  1  0
 44119  1  0
 48120  1  1
 49121  1  0
 50122  1  0
 50123  1  0
 51124  1  1
 52125  1  0
 53126  1  6
 54127  1  0
 55128  1  0
 56129  1  6
 57130  1  0
 58131  1  0
 58132  1  0
 59133  1  0
 59134  1  0
 60135  1  0
 60136  1  0
 61137  1  0
 61138  1  0
 62139  1  0
 62140  1  0
 62141  1  0
 63142  1  1
 64143  1  0
 65144  1  6
 66145  1  0
M  END
Download

PDB for HMDB0278253 (PI(22:5(7Z,10Z,13Z,16Z,19Z)/5-iso PGF2VI))

HEADER    PROTEIN                                 13-SEP-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   13-SEP-21         0                                  
HETATM    1  O   UNK     0       1.644  -5.535   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       2.298  -4.064   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.360  -2.727   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      -0.119  -3.372   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       1.224  -1.104   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0      -0.371  -0.867   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       1.918   0.396   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       1.746   1.816   0.000  0.00  0.00           O+0
HETATM    9  P   UNK     0       3.285   0.993   0.000  0.00  0.00           P+0
HETATM   10  O   UNK     0       3.671   2.769   0.000  0.00  0.00           O+0
HETATM   11  O   UNK     0       2.193   2.609   0.000  0.00  0.00           O+0
HETATM   12  O   UNK     0       4.612   2.182   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       6.152   2.677   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       7.716   2.482   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       8.765   4.208   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       9.529   5.829   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0      10.110   7.441   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       9.058   8.657   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0      11.656   8.025   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      13.180   8.609   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      14.755   8.123   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      16.076   7.134   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      17.073   5.829   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      18.230   4.682   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      19.794   4.802   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      20.459   6.191   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      21.995   6.308   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      22.661   7.697   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      21.791   8.968   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      22.457  10.357   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      21.587  11.627   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      20.051  11.510   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      19.182  12.780   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      17.646  12.663   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      16.980  11.274   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      15.445  11.156   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      14.779   9.768   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      15.649   8.497   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      17.184   8.615   0.000  0.00  0.00           C+0
HETATM   40  O   UNK     0       8.913   1.452   0.000  0.00  0.00           O+0
HETATM   41  C   UNK     0       9.323  -0.076   0.000  0.00  0.00           C+0
HETATM   42  O   UNK     0      11.138  -0.302   0.000  0.00  0.00           O+0
HETATM   43  C   UNK     0       9.090  -1.670   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0       8.261  -3.057   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0       7.049  -4.173   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0       5.481  -4.715   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0       3.841  -4.531   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0       3.641  -2.972   0.000  0.00  0.00           C+0
HETATM   49  O   UNK     0       2.615  -1.918   0.000  0.00  0.00           O+0
HETATM   50  C   UNK     0       5.157  -2.606   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0       6.297  -1.588   0.000  0.00  0.00           C+0
HETATM   52  O   UNK     0       8.051  -1.886   0.000  0.00  0.00           O+0
HETATM   53  C   UNK     0       5.477  -0.280   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0       7.186  -0.320   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0       8.607   0.595   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0       9.175   2.477   0.000  0.00  0.00           C+0
HETATM   57  O   UNK     0       7.806   3.633   0.000  0.00  0.00           O+0
HETATM   58  C   UNK     0      10.888   2.867   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0      12.512   2.390   0.000  0.00  0.00           C+0
HETATM   60  C   UNK     0      14.152   2.328   0.000  0.00  0.00           C+0
HETATM   61  C   UNK     0      15.387   1.256   0.000  0.00  0.00           C+0
HETATM   62  C   UNK     0      16.843   1.758   0.000  0.00  0.00           C+0
HETATM   63  C   UNK     0       2.960   1.816   0.000  0.00  0.00           C+0
HETATM   64  O   UNK     0       2.549   3.680   0.000  0.00  0.00           O+0
HETATM   65  C   UNK     0       4.337   0.766   0.000  0.00  0.00           C+0
HETATM   66  O   UNK     0       5.717   1.054   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   47                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8   63                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10   11   12                                             
CONECT   10    9                                                            
CONECT   11    9                                                            
CONECT   12    9   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   40                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38                                                            
CONECT   40   14   41                                                       
CONECT   41   40   42   43                                                  
CONECT   42   41                                                            
CONECT   43   41   44                                                       
CONECT   44   43   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46    2   48                                                  
CONECT   48   47   49   50                                                  
CONECT   49   48                                                            
CONECT   50   48   51                                                       
CONECT   51   50   52   53                                                  
CONECT   52   51                                                            
CONECT   53   51   54   65                                                  
CONECT   54   53   55                                                       
CONECT   55   54   56                                                       
CONECT   56   55   57   58                                                  
CONECT   57   56                                                            
CONECT   58   56   59                                                       
CONECT   59   58   60                                                       
CONECT   60   59   61                                                       
CONECT   61   60   62                                                       
CONECT   62   61                                                            
CONECT   63    7   64   65                                                  
CONECT   64   63                                                            
CONECT   65   63   53   66                                                  
CONECT   66   65                                                            
MASTER        0    0    0    0    0    0    0    0   66    0  134    0
END
Download

3D PDB for HMDB0278253 (PI(22:5(7Z,10Z,13Z,16Z,19Z)/5-iso PGF2VI))

COMPND    HMDB0278253
HETATM    1  C1  UNL     1      14.723   4.267  -0.740  1.00  0.00           C  
HETATM    2  C2  UNL     1      14.632   2.776  -0.414  1.00  0.00           C  
HETATM    3  C3  UNL     1      15.778   2.097  -1.017  1.00  0.00           C  
HETATM    4  C4  UNL     1      15.846   1.174  -1.912  1.00  0.00           C  
HETATM    5  C5  UNL     1      14.741   0.532  -2.605  1.00  0.00           C  
HETATM    6  C6  UNL     1      13.379   0.938  -2.385  1.00  0.00           C  
HETATM    7  C7  UNL     1      12.460   0.167  -1.886  1.00  0.00           C  
HETATM    8  C8  UNL     1      12.729  -1.262  -1.475  1.00  0.00           C  
HETATM    9  C9  UNL     1      11.882  -2.128  -2.290  1.00  0.00           C  
HETATM   10  C10 UNL     1      11.012  -2.998  -1.922  1.00  0.00           C  
HETATM   11  C11 UNL     1      10.629  -3.375  -0.590  1.00  0.00           C  
HETATM   12  C12 UNL     1      11.225  -2.854   0.603  1.00  0.00           C  
HETATM   13  C13 UNL     1      10.574  -2.176   1.529  1.00  0.00           C  
HETATM   14  C14 UNL     1       9.120  -1.884   1.409  1.00  0.00           C  
HETATM   15  C15 UNL     1       8.433  -2.550   2.531  1.00  0.00           C  
HETATM   16  C16 UNL     1       7.728  -1.926   3.441  1.00  0.00           C  
HETATM   17  C17 UNL     1       7.470  -0.496   3.547  1.00  0.00           C  
HETATM   18  C18 UNL     1       6.050  -0.077   3.566  1.00  0.00           C  
HETATM   19  C19 UNL     1       5.163  -0.358   2.430  1.00  0.00           C  
HETATM   20  C20 UNL     1       4.935  -1.769   2.041  1.00  0.00           C  
HETATM   21  C21 UNL     1       3.952  -1.901   0.874  1.00  0.00           C  
HETATM   22  C22 UNL     1       2.646  -1.360   1.325  1.00  0.00           C  
HETATM   23  O1  UNL     1       2.424  -0.143   1.207  1.00  0.00           O  
HETATM   24  O2  UNL     1       1.679  -2.137   1.861  1.00  0.00           O  
HETATM   25  C23 UNL     1       0.434  -1.957   2.344  1.00  0.00           C  
HETATM   26  C24 UNL     1      -0.583  -1.420   1.324  1.00  0.00           C  
HETATM   27  C25 UNL     1      -0.485  -2.409   0.164  1.00  0.00           C  
HETATM   28  O3  UNL     1      -1.616  -2.488  -0.617  1.00  0.00           O  
HETATM   29  P1  UNL     1      -2.315  -1.011  -0.949  1.00  0.00           P  
HETATM   30  O4  UNL     1      -2.967  -0.558   0.350  1.00  0.00           O  
HETATM   31  O5  UNL     1      -1.202   0.109  -1.541  1.00  0.00           O  
HETATM   32  O6  UNL     1      -3.560  -1.093  -2.124  1.00  0.00           O  
HETATM   33  C26 UNL     1      -4.701  -0.411  -1.620  1.00  0.00           C  
HETATM   34  C27 UNL     1      -4.824   0.990  -2.089  1.00  0.00           C  
HETATM   35  O7  UNL     1      -3.939   1.165  -3.156  1.00  0.00           O  
HETATM   36  C28 UNL     1      -4.485   2.049  -1.024  1.00  0.00           C  
HETATM   37  O8  UNL     1      -4.146   3.180  -1.837  1.00  0.00           O  
HETATM   38  C29 UNL     1      -5.638   2.460  -0.200  1.00  0.00           C  
HETATM   39  O9  UNL     1      -6.131   3.732  -0.637  1.00  0.00           O  
HETATM   40  C30 UNL     1      -5.603   2.391   1.261  1.00  0.00           C  
HETATM   41  C31 UNL     1      -4.348   2.062   1.985  1.00  0.00           C  
HETATM   42  C32 UNL     1      -3.195   2.916   1.642  1.00  0.00           C  
HETATM   43  C33 UNL     1      -2.023   2.714   2.189  1.00  0.00           C  
HETATM   44  C34 UNL     1      -1.483   1.368   2.475  1.00  0.00           C  
HETATM   45  C35 UNL     1      -0.457   1.077   1.457  1.00  0.00           C  
HETATM   46  O10 UNL     1       0.264   2.087   1.117  1.00  0.00           O  
HETATM   47  O11 UNL     1      -0.260  -0.134   0.902  1.00  0.00           O  
HETATM   48  C36 UNL     1      -6.800   1.609   1.852  1.00  0.00           C  
HETATM   49  O12 UNL     1      -7.901   2.039   1.138  1.00  0.00           O  
HETATM   50  C37 UNL     1      -6.585   0.138   1.891  1.00  0.00           C  
HETATM   51  C38 UNL     1      -7.697  -0.719   1.391  1.00  0.00           C  
HETATM   52  O13 UNL     1      -8.933  -0.368   1.946  1.00  0.00           O  
HETATM   53  C39 UNL     1      -7.784  -0.947  -0.086  1.00  0.00           C  
HETATM   54  C40 UNL     1      -9.029  -1.781  -0.334  1.00  0.00           C  
HETATM   55  C41 UNL     1     -10.037  -1.382  -1.082  1.00  0.00           C  
HETATM   56  C42 UNL     1     -10.078  -0.089  -1.760  1.00  0.00           C  
HETATM   57  O14 UNL     1      -9.873   1.012  -0.921  1.00  0.00           O  
HETATM   58  C43 UNL     1     -11.506   0.096  -2.313  1.00  0.00           C  
HETATM   59  C44 UNL     1     -12.509   0.081  -1.198  1.00  0.00           C  
HETATM   60  C45 UNL     1     -13.906   0.266  -1.708  1.00  0.00           C  
HETATM   61  C46 UNL     1     -14.113   1.571  -2.443  1.00  0.00           C  
HETATM   62  C47 UNL     1     -15.567   1.604  -2.892  1.00  0.00           C  
HETATM   63  C48 UNL     1      -6.583  -1.724  -0.567  1.00  0.00           C  
HETATM   64  O15 UNL     1      -6.988  -3.072  -0.748  1.00  0.00           O  
HETATM   65  C49 UNL     1      -5.973  -1.242  -1.843  1.00  0.00           C  
HETATM   66  O16 UNL     1      -6.828  -0.625  -2.719  1.00  0.00           O  
HETATM   67  H1  UNL     1      13.760   4.769  -0.543  1.00  0.00           H  
HETATM   68  H2  UNL     1      15.567   4.687  -0.181  1.00  0.00           H  
HETATM   69  H3  UNL     1      14.942   4.367  -1.833  1.00  0.00           H  
HETATM   70  H4  UNL     1      14.796   2.770   0.724  1.00  0.00           H  
HETATM   71  H5  UNL     1      13.646   2.429  -0.587  1.00  0.00           H  
HETATM   72  H6  UNL     1      16.769   2.472  -0.602  1.00  0.00           H  
HETATM   73  H7  UNL     1      16.903   0.853  -2.164  1.00  0.00           H  
HETATM   74  H8  UNL     1      14.846  -0.590  -2.594  1.00  0.00           H  
HETATM   75  H9  UNL     1      14.978   0.761  -3.738  1.00  0.00           H  
HETATM   76  H10 UNL     1      13.082   1.962  -2.695  1.00  0.00           H  
HETATM   77  H11 UNL     1      11.454   0.562  -1.759  1.00  0.00           H  
HETATM   78  H12 UNL     1      13.758  -1.567  -1.574  1.00  0.00           H  
HETATM   79  H13 UNL     1      12.507  -1.255  -0.387  1.00  0.00           H  
HETATM   80  H14 UNL     1      12.058  -1.968  -3.407  1.00  0.00           H  
HETATM   81  H15 UNL     1      10.489  -3.530  -2.784  1.00  0.00           H  
HETATM   82  H16 UNL     1      10.827  -4.547  -0.567  1.00  0.00           H  
HETATM   83  H17 UNL     1       9.493  -3.424  -0.552  1.00  0.00           H  
HETATM   84  H18 UNL     1      12.308  -3.037   0.855  1.00  0.00           H  
HETATM   85  H19 UNL     1      11.109  -1.805   2.423  1.00  0.00           H  
HETATM   86  H20 UNL     1       8.681  -2.095   0.428  1.00  0.00           H  
HETATM   87  H21 UNL     1       8.985  -0.767   1.523  1.00  0.00           H  
HETATM   88  H22 UNL     1       8.527  -3.636   2.596  1.00  0.00           H  
HETATM   89  H23 UNL     1       7.285  -2.593   4.217  1.00  0.00           H  
HETATM   90  H24 UNL     1       7.867  -0.217   4.598  1.00  0.00           H  
HETATM   91  H25 UNL     1       8.091   0.160   2.896  1.00  0.00           H  
HETATM   92  H26 UNL     1       5.619  -0.418   4.553  1.00  0.00           H  
HETATM   93  H27 UNL     1       6.052   1.057   3.700  1.00  0.00           H  
HETATM   94  H28 UNL     1       4.168   0.147   2.647  1.00  0.00           H  
HETATM   95  H29 UNL     1       5.546   0.232   1.543  1.00  0.00           H  
HETATM   96  H30 UNL     1       5.834  -2.305   1.697  1.00  0.00           H  
HETATM   97  H31 UNL     1       4.494  -2.288   2.949  1.00  0.00           H  
HETATM   98  H32 UNL     1       4.275  -1.330   0.004  1.00  0.00           H  
HETATM   99  H33 UNL     1       3.824  -2.991   0.650  1.00  0.00           H  
HETATM  100  H34 UNL     1      -0.002  -2.935   2.677  1.00  0.00           H  
HETATM  101  H35 UNL     1       0.344  -1.253   3.212  1.00  0.00           H  
HETATM  102  H36 UNL     1      -1.557  -1.424   1.815  1.00  0.00           H  
HETATM  103  H37 UNL     1      -0.392  -3.427   0.650  1.00  0.00           H  
HETATM  104  H38 UNL     1       0.441  -2.273  -0.399  1.00  0.00           H  
HETATM  105  H39 UNL     1      -1.482   1.013  -1.272  1.00  0.00           H  
HETATM  106  H40 UNL     1      -4.562  -0.402  -0.544  1.00  0.00           H  
HETATM  107  H41 UNL     1      -5.836   1.239  -2.488  1.00  0.00           H  
HETATM  108  H42 UNL     1      -4.041   0.448  -3.822  1.00  0.00           H  
HETATM  109  H43 UNL     1      -3.560   1.832  -0.512  1.00  0.00           H  
HETATM  110  H44 UNL     1      -5.006   3.409  -2.286  1.00  0.00           H  
HETATM  111  H45 UNL     1      -6.498   1.787  -0.534  1.00  0.00           H  
HETATM  112  H46 UNL     1      -5.713   4.442  -0.089  1.00  0.00           H  
HETATM  113  H47 UNL     1      -5.852   3.452   1.632  1.00  0.00           H  
HETATM  114  H48 UNL     1      -4.138   0.992   2.083  1.00  0.00           H  
HETATM  115  H49 UNL     1      -4.579   2.351   3.081  1.00  0.00           H  
HETATM  116  H50 UNL     1      -3.359   3.725   0.916  1.00  0.00           H  
HETATM  117  H51 UNL     1      -1.390   3.579   2.450  1.00  0.00           H  
HETATM  118  H52 UNL     1      -0.898   1.466   3.450  1.00  0.00           H  
HETATM  119  H53 UNL     1      -2.239   0.590   2.609  1.00  0.00           H  
HETATM  120  H54 UNL     1      -6.951   1.978   2.916  1.00  0.00           H  
HETATM  121  H55 UNL     1      -8.302   2.813   1.605  1.00  0.00           H  
HETATM  122  H56 UNL     1      -5.644  -0.195   1.440  1.00  0.00           H  
HETATM  123  H57 UNL     1      -6.456  -0.177   2.993  1.00  0.00           H  
HETATM  124  H58 UNL     1      -7.502  -1.752   1.829  1.00  0.00           H  
HETATM  125  H59 UNL     1      -9.029  -0.724   2.871  1.00  0.00           H  
HETATM  126  H60 UNL     1      -7.888  -0.078  -0.715  1.00  0.00           H  
HETATM  127  H61 UNL     1      -9.068  -2.767   0.151  1.00  0.00           H  
HETATM  128  H62 UNL     1     -10.877  -2.097  -1.176  1.00  0.00           H  
HETATM  129  H63 UNL     1      -9.435   0.034  -2.635  1.00  0.00           H  
HETATM  130  H64 UNL     1     -10.322   0.903  -0.052  1.00  0.00           H  
HETATM  131  H65 UNL     1     -11.550   1.054  -2.873  1.00  0.00           H  
HETATM  132  H66 UNL     1     -11.649  -0.760  -3.002  1.00  0.00           H  
HETATM  133  H67 UNL     1     -12.465  -0.921  -0.710  1.00  0.00           H  
HETATM  134  H68 UNL     1     -12.324   0.834  -0.426  1.00  0.00           H  
HETATM  135  H69 UNL     1     -14.626   0.256  -0.875  1.00  0.00           H  
HETATM  136  H70 UNL     1     -14.137  -0.575  -2.392  1.00  0.00           H  
HETATM  137  H71 UNL     1     -13.442   1.673  -3.318  1.00  0.00           H  
HETATM  138  H72 UNL     1     -13.924   2.445  -1.786  1.00  0.00           H  
HETATM  139  H73 UNL     1     -16.052   2.528  -2.500  1.00  0.00           H  
HETATM  140  H74 UNL     1     -15.652   1.672  -4.012  1.00  0.00           H  
HETATM  141  H75 UNL     1     -16.114   0.694  -2.593  1.00  0.00           H  
HETATM  142  H76 UNL     1      -5.746  -1.748   0.193  1.00  0.00           H  
HETATM  143  H77 UNL     1      -7.668  -3.062  -1.483  1.00  0.00           H  
HETATM  144  H78 UNL     1      -5.605  -2.169  -2.385  1.00  0.00           H  
HETATM  145  H79 UNL     1      -7.053  -1.183  -3.529  1.00  0.00           H  
CONECT    1    2   67   68   69
CONECT    2    3   70   71
CONECT    3    4    4   72
CONECT    4    5   73
CONECT    5    6   74   75
CONECT    6    7    7   76
CONECT    7    8   77
CONECT    8    9   78   79
CONECT    9   10   10   80
CONECT   10   11   81
CONECT   11   12   82   83
CONECT   12   13   13   84
CONECT   13   14   85
CONECT   14   15   86   87
CONECT   15   16   16   88
CONECT   16   17   89
CONECT   17   18   90   91
CONECT   18   19   92   93
CONECT   19   20   94   95
CONECT   20   21   96   97
CONECT   21   22   98   99
CONECT   22   23   23   24
CONECT   24   25
CONECT   25   26  100  101
CONECT   26   27   47  102
CONECT   27   28  103  104
CONECT   28   29
CONECT   29   30   30   31   32
CONECT   31  105
CONECT   32   33
CONECT   33   34   65  106
CONECT   34   35   36  107
CONECT   35  108
CONECT   36   37   38  109
CONECT   37  110
CONECT   38   39   40  111
CONECT   39  112
CONECT   40   41   48  113
CONECT   41   42  114  115
CONECT   42   43   43  116
CONECT   43   44  117
CONECT   44   45  118  119
CONECT   45   46   46   47
CONECT   48   49   50  120
CONECT   49  121
CONECT   50   51  122  123
CONECT   51   52   53  124
CONECT   52  125
CONECT   53   54   63  126
CONECT   54   55   55  127
CONECT   55   56  128
CONECT   56   57   58  129
CONECT   57  130
CONECT   58   59  131  132
CONECT   59   60  133  134
CONECT   60   61  135  136
CONECT   61   62  137  138
CONECT   62  139  140  141
CONECT   63   64   65  142
CONECT   64  143
CONECT   65   66  144
CONECT   66  145
END
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SMILES for HMDB0278253 (PI(22:5(7Z,10Z,13Z,16Z,19Z)/5-iso PGF2VI))

CCCCC[C@@H](O)\C=C/[C@H]1[C@H](O)C[C@H](O)[C@H]2C\C=C/CC(=O)O[C@H](COC(=O)CCCCC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CC)COP(O)(=O)O[C@@H]([C@H](O)[C@@H](O)[C@@H]2O)[C@H](O)[C@@H]1O
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INCHI for HMDB0278253 (PI(22:5(7Z,10Z,13Z,16Z,19Z)/5-iso PGF2VI))

InChI=1S/C49H79O16P/c1-3-5-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-24-29-42(53)62-34-37-35-63-66(60,61)65-49-47(58)45(56)39(32-31-36(50)27-23-6-4-2)41(52)33-40(51)38(44(55)46(57)48(49)59)28-25-26-30-43(54)64-37/h5,7,9-10,12-13,15-16,18-19,25-26,31-32,36-41,44-52,55-59H,3-4,6,8,11,14,17,20-24,27-30,33-35H2,1-2H3,(H,60,61)/b7-5-,10-9-,13-12-,16-15-,19-18-,26-25-,32-31-/t36-,37-,38-,39+,40+,41-,44-,45?,46+,47-,48-,49-/m1/s1
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View in JSmolView Stereo Labels
Synonyms
ValueSource
[(1R,6R,10Z,13R,14S,16R,17S,19R,20R,21S,22R)-3,14,16,18,19,20,21,22-Octahydroxy-17-[(3R)-3-hydroxyoct-1-en-1-yl]-3,8-dioxo-2,4,7-trioxa-3-phosphabicyclo[11.6.3]docos-10-en-6-yl]methyl (7Z,10Z,13Z,16Z)-docosa-7,10,13,16,19-pentaenoic acidGenerator
Chemical FormulaC49H79O16P
Average Molecular Weight955.129
Monoisotopic Molecular Weight954.510573462
IUPAC Name[(1R,6R,10Z,13R,14S,16R,17S,18R,19R,20R,21S,22R)-3,14,16,18,19,20,21,22-octahydroxy-17-[(1E,3R)-3-hydroxyoct-1-en-1-yl]-3,8-dioxo-2,4,7-trioxa-3lambda5-phosphabicyclo[11.6.3]docos-10-en-6-yl]methyl (7Z,10Z,13Z,16Z,19Z)-docosa-7,10,13,16,19-pentaenoate
Traditional Name[(1R,6R,10Z,13R,14S,16R,17S,18R,19R,20R,21S,22R)-3,14,16,18,19,20,21,22-octahydroxy-17-[(1E,3R)-3-hydroxyoct-1-en-1-yl]-3,8-dioxo-2,4,7-trioxa-3lambda5-phosphabicyclo[11.6.3]docos-10-en-6-yl]methyl (7Z,10Z,13Z,16Z,19Z)-docosa-7,10,13,16,19-pentaenoate
CAS Registry NumberNot Available
SMILES
CCCCC[C@@H](O)\C=C/[C@H]1[C@H](O)C[C@H](O)[C@H]2C\C=C/CC(=O)O[C@H](COC(=O)CCCCC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CC)COP(O)(=O)O[C@@H]([C@H](O)[C@@H](O)[C@@H]2O)[C@H](O)[C@@H]1O
InChI Identifier
InChI=1S/C49H79O16P/c1-3-5-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-24-29-42(53)62-34-37-35-63-66(60,61)65-49-47(58)45(56)39(32-31-36(50)27-23-6-4-2)41(52)33-40(51)38(44(55)46(57)48(49)59)28-25-26-30-43(54)64-37/h5,7,9-10,12-13,15-16,18-19,25-26,31-32,36-41,44-52,55-59H,3-4,6,8,11,14,17,20-24,27-30,33-35H2,1-2H3,(H,60,61)/b7-5-,10-9-,13-12-,16-15-,19-18-,26-25-,32-31-/t36-,37-,38-,39+,40+,41-,44-,45?,46+,47-,48-,49-/m1/s1
InChI KeyMIDCNYFVOQUJBU-WTCRNGOLSA-N
Chemical Taxonomy
ClassificationNot classified
Ontology
Physiological effect
Health effect
Disposition
Biological location
Process
Naturally occurring process
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP4.43ALOGPS
logP5.09ChemAxon
logS-4.7ALOGPS
pKa (Strongest Acidic)1.83ChemAxon
pKa (Strongest Basic)-2.9ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count12ChemAxon
Hydrogen Donor Count9ChemAxon
Polar Surface Area270.2 ŲChemAxon
Rotatable Bond Count24ChemAxon
Refractivity258.05 m³·mol⁻¹ChemAxon
Polarizability103.06 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+303.08332859911
AllCCS[M+H-H2O]+303.41532859911
AllCCS[M+Na]+302.63332859911
AllCCS[M+NH4]+302.73932859911
AllCCS[M-H]-302.12632859911
AllCCS[M+Na-2H]-309.25632859911
AllCCS[M+HCOO]-317.02732859911
DeepCCS[M+H]+301.84430932474
DeepCCS[M-H]-299.64330932474
DeepCCS[M-2H]-333.54130932474
DeepCCS[M+Na]+307.96730932474

Predicted Kovats Retention Indices

Not Available
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PI(22:5(7Z,10Z,13Z,16Z,19Z)/5-iso PGF2VI) 10V, Positive-QTOFsplash10-052r-1000000019-5feb0133c59ae2c3e75a2021-10-19Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PI(22:5(7Z,10Z,13Z,16Z,19Z)/5-iso PGF2VI) 20V, Positive-QTOFsplash10-00kr-4100000059-198d518506b74f6264002021-10-19Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PI(22:5(7Z,10Z,13Z,16Z,19Z)/5-iso PGF2VI) 40V, Positive-QTOFsplash10-00fr-2955001000-9394c0cd524f79a4cda52021-10-19Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PI(22:5(7Z,10Z,13Z,16Z,19Z)/5-iso PGF2VI) 10V, Negative-QTOFsplash10-0udi-0000000009-c2868314f09e414213252021-10-19Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PI(22:5(7Z,10Z,13Z,16Z,19Z)/5-iso PGF2VI) 20V, Negative-QTOFsplash10-0f79-0002000029-e04fa47d6be3053196f12021-10-19Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - PI(22:5(7Z,10Z,13Z,16Z,19Z)/5-iso PGF2VI) 40V, Negative-QTOFsplash10-06vi-3149043011-ac8ac15dc9daf46862dd2021-10-19Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available