| Record Information |
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| Version | 5.0 |
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| Status | Expected but not Quantified |
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| Creation Date | 2021-09-24 06:24:35 UTC |
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| Update Date | 2021-09-24 06:24:35 UTC |
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| HMDB ID | HMDB0304010 |
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| Secondary Accession Numbers | None |
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| Metabolite Identification |
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| Common Name | 1,4-dihydroxy-2-naphthoyl-CoA |
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| Description | 1,4-dihydroxy-2-naphthoyl-coa, also known as dhna-coa, is a member of the class of compounds known as acyl coas. Acyl coas are organic compounds containing a coenzyme A substructure linked to an acyl chain. 1,4-dihydroxy-2-naphthoyl-coa is slightly soluble (in water) and an extremely strong acidic compound (based on its pKa). 1,4-dihydroxy-2-naphthoyl-coa can be found in a number of food items such as orange mint, winged bean, hard wheat, and white mustard, which makes 1,4-dihydroxy-2-naphthoyl-coa a potential biomarker for the consumption of these food products. 1,4-dihydroxy-2-naphthoyl-coa may be a unique E.coli metabolite. |
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| Structure | [H][C@](O)(C(O)=NCCC(O)=NCCSC(=O)C1=C(O)C2=CC=CC=C2C(O)=C1)C(C)(C)COP(O)(=O)OP(O)(=O)OC[C@@]1([H])O[C@@]([H])(N2C=NC3=C(N)N=CN=C23)[C@]([H])(O)[C@]1([H])OP(O)(O)=O InChI=1S/C32H42N7O19P3S/c1-32(2,26(44)29(45)35-8-7-21(41)34-9-10-62-31(46)18-11-19(40)16-5-3-4-6-17(16)23(18)42)13-55-61(52,53)58-60(50,51)54-12-20-25(57-59(47,48)49)24(43)30(56-20)39-15-38-22-27(33)36-14-37-28(22)39/h3-6,11,14-15,20,24-26,30,40,42-44H,7-10,12-13H2,1-2H3,(H,34,41)(H,35,45)(H,50,51)(H,52,53)(H2,33,36,37)(H2,47,48,49)/t20-,24-,25-,26+,30-/m1/s1 |
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| Synonyms | | Value | Source |
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| 1,4-Dihydroxy-2-naphthoyl-coenzyme A | ChEBI | | DHNA-CoA | ChEBI |
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| Chemical Formula | C32H42N7O19P3S |
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| Average Molecular Weight | 953.698 |
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| Monoisotopic Molecular Weight | 953.146902423 |
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| IUPAC Name | (2R)-4-({[({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)-N-(2-{[2-(1,4-dihydroxynaphthalene-2-carbonylsulfanyl)ethyl]-C-hydroxycarbonimidoyl}ethyl)-2-hydroxy-3,3-dimethylbutanimidic acid |
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| Traditional Name | (2R)-4-[({[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methoxy(hydroxy)phosphoryl}oxy(hydroxy)phosphoryl)oxy]-N-(2-{[2-(1,4-dihydroxynaphthalene-2-carbonylsulfanyl)ethyl]-C-hydroxycarbonimidoyl}ethyl)-2-hydroxy-3,3-dimethylbutanimidic acid |
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| CAS Registry Number | Not Available |
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| SMILES | [H][C@](O)(C(O)=NCCC(O)=NCCSC(=O)C1=C(O)C2=CC=CC=C2C(O)=C1)C(C)(C)COP(O)(=O)OP(O)(=O)OC[C@@]1([H])O[C@@]([H])(N2C=NC3=C(N)N=CN=C23)[C@]([H])(O)[C@]1([H])OP(O)(O)=O |
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| InChI Identifier | InChI=1S/C32H42N7O19P3S/c1-32(2,26(44)29(45)35-8-7-21(41)34-9-10-62-31(46)18-11-19(40)16-5-3-4-6-17(16)23(18)42)13-55-61(52,53)58-60(50,51)54-12-20-25(57-59(47,48)49)24(43)30(56-20)39-15-38-22-27(33)36-14-37-28(22)39/h3-6,11,14-15,20,24-26,30,40,42-44H,7-10,12-13H2,1-2H3,(H,34,41)(H,35,45)(H,50,51)(H,52,53)(H2,33,36,37)(H2,47,48,49)/t20-,24-,25-,26+,30-/m1/s1 |
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| InChI Key | PYTINLGPKDJURZ-HSJNEKGZSA-N |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as acyl coas. These are organic compounds containing a coenzyme A substructure linked to an acyl chain. |
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| Kingdom | Organic compounds |
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| Super Class | Lipids and lipid-like molecules |
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| Class | Fatty Acyls |
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| Sub Class | Fatty acyl thioesters |
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| Direct Parent | Acyl CoAs |
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| Alternative Parents | |
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| Substituents | - Coenzyme a or derivatives
- Purine ribonucleoside diphosphate
- Purine ribonucleoside bisphosphate
- Purine ribonucleoside 3',5'-bisphosphate
- Ribonucleoside 3'-phosphate
- Pentose-5-phosphate
- Pentose phosphate
- 2-naphthalenecarboxylic acid or derivatives
- Beta amino acid or derivatives
- Glycosyl compound
- N-glycosyl compound
- 1-naphthol
- Salicylic acid or derivatives
- 6-aminopurine
- Pentose monosaccharide
- Organic pyrophosphate
- Monosaccharide phosphate
- Naphthalene
- Thiobenzoic acid or derivatives
- Imidazopyrimidine
- Purine
- Hydroquinone
- Monoalkyl phosphate
- 1-hydroxy-2-unsubstituted benzenoid
- Aminopyrimidine
- Fatty amide
- Monosaccharide
- N-acyl-amine
- N-substituted imidazole
- Imidolactam
- Organic phosphoric acid derivative
- Benzenoid
- Alkyl phosphate
- Phosphoric acid ester
- Pyrimidine
- Tetrahydrofuran
- Heteroaromatic compound
- Imidazole
- Azole
- Vinylogous acid
- Carboxamide group
- Secondary alcohol
- Secondary carboxylic acid amide
- Thiocarboxylic acid ester
- Amino acid or derivatives
- Carbothioic s-ester
- Organoheterocyclic compound
- Azacycle
- Thiocarboxylic acid or derivatives
- Oxacycle
- Sulfenyl compound
- Carboxylic acid derivative
- Primary amine
- Organic nitrogen compound
- Organic oxide
- Hydrocarbon derivative
- Organopnictogen compound
- Organooxygen compound
- Organosulfur compound
- Carbonyl group
- Alcohol
- Amine
- Organonitrogen compound
- Organic oxygen compound
- Aromatic heteropolycyclic compound
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| Molecular Framework | Aromatic heteropolycyclic compounds |
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| External Descriptors | |
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| Ontology |
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| Physiological effect | Not Available |
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| Disposition | |
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| Process | |
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| Role | Not Available |
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| Physical Properties |
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| State | Not Available |
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| Experimental Molecular Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Experimental Chromatographic Properties | Not Available |
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| Predicted Molecular Properties | |
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| Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Retention Times Underivatized| Chromatographic Method | Retention Time | Reference |
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| Predicted by Siyang on May 30, 2022 | 11.0932 minutes | 33406817 | | Predicted by Siyang using ReTip algorithm on June 8, 2022 | 8.9 minutes | 32390414 | | Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid | 1259.8 seconds | 40023050 | | Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid | 171.3 seconds | 40023050 | | Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid | 119.9 seconds | 40023050 | | Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid | 165.1 seconds | 40023050 | | RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 95.0 seconds | 40023050 | | Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid | 426.7 seconds | 40023050 | | BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid | 526.0 seconds | 40023050 | | HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate) | 871.6 seconds | 40023050 | | UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid | 633.5 seconds | 40023050 | | BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid | 413.3 seconds | 40023050 | | UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid | 824.1 seconds | 40023050 | | SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 246.2 seconds | 40023050 | | RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 261.4 seconds | 40023050 | | MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate | 410.4 seconds | 40023050 | | KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA | 365.1 seconds | 40023050 | | Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water | 352.6 seconds | 40023050 |
Predicted Kovats Retention IndicesNot Available |
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| MS/MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
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| Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1,4-dihydroxy-2-naphthoyl-CoA 10V, Positive-QTOF | splash10-000i-1955100102-0fde5542c1568ba82d5f | 2015-09-15 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1,4-dihydroxy-2-naphthoyl-CoA 20V, Positive-QTOF | splash10-01p9-0952200000-b4a4ffa5cb62c6d358b5 | 2015-09-15 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1,4-dihydroxy-2-naphthoyl-CoA 40V, Positive-QTOF | splash10-01p9-2932000000-e29227c090d087e2f7db | 2015-09-15 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1,4-dihydroxy-2-naphthoyl-CoA 10V, Negative-QTOF | splash10-0569-2911021403-1862354be630ac81b2f8 | 2015-09-15 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1,4-dihydroxy-2-naphthoyl-CoA 20V, Negative-QTOF | splash10-001i-2900100001-ce85346d9f708fe780a1 | 2015-09-15 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1,4-dihydroxy-2-naphthoyl-CoA 40V, Negative-QTOF | splash10-057i-5900000000-27976ab9b9be4acd3a34 | 2015-09-15 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1,4-dihydroxy-2-naphthoyl-CoA 10V, Positive-QTOF | splash10-0udi-0000000009-aa47b7bee7fae576c874 | 2021-10-21 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1,4-dihydroxy-2-naphthoyl-CoA 20V, Positive-QTOF | splash10-0f79-0422712419-78e152c0761b599e872c | 2021-10-21 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1,4-dihydroxy-2-naphthoyl-CoA 40V, Positive-QTOF | splash10-0002-0201900000-e76cf5fd5292c30e7132 | 2021-10-21 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1,4-dihydroxy-2-naphthoyl-CoA 10V, Negative-QTOF | splash10-0udi-0000000009-b768a8f4d0fc97388be0 | 2021-10-21 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1,4-dihydroxy-2-naphthoyl-CoA 20V, Negative-QTOF | splash10-0ufr-4831204509-021f2308985916c473c7 | 2021-10-21 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - 1,4-dihydroxy-2-naphthoyl-CoA 40V, Negative-QTOF | splash10-0f92-7102614902-c2caf4b4e82fedd2e2c0 | 2021-10-21 | Wishart Lab | View Spectrum |
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