| Record Information |
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| Version | 5.0 |
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| Status | Expected but not Quantified |
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| Creation Date | 2021-09-24 20:18:15 UTC |
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| Update Date | 2021-09-24 20:18:16 UTC |
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| HMDB ID | HMDB0304865 |
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| Secondary Accession Numbers | None |
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| Metabolite Identification |
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| Common Name | Selpercatinib |
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| Description | Selpercatinib, also known as loxo-292, belongs to the class of organic compounds known as pyridinylpiperazines. Pyridinylpiperazines are compounds containing a pyridinylpiperazine skeleton, which consists of a pyridine linked (not fused) to a piperazine by a bond by a single bond that is not part of a ring. Based on a literature review a significant number of articles have been published on Selpercatinib. |
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| Structure | COC1=NC=C(CN2C3CC2CN(C3)C2=CC=C(C=N2)C2=CC(OCC(C)(C)O)=CN3N=CC(C#N)=C23)C=C1 InChI=1S/C29H31N7O3/c1-29(2,37)18-39-24-9-25(28-21(10-30)13-33-36(28)17-24)20-5-6-26(31-12-20)34-15-22-8-23(16-34)35(22)14-19-4-7-27(38-3)32-11-19/h4-7,9,11-13,17,22-23,37H,8,14-16,18H2,1-3H3 |
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| Synonyms | | Value | Source |
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| 6-(2-Hydroxy-2-methylpropoxy)-4-(6-(6-((6-methoxypyridin-3-yl)methyl)-3,6-diazabicyclo(3.1.1)heptan-3-yl)pyridin-3-yl)pyrazolo(1,5-a)pyridine-3-carbonitrile | HMDB | | LOXO-292 | HMDB | | Serpercatinib | HMDB |
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| Chemical Formula | C29H31N7O3 |
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| Average Molecular Weight | 525.613 |
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| Monoisotopic Molecular Weight | 525.248837886 |
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| IUPAC Name | 6-(2-hydroxy-2-methylpropoxy)-4-(6-{6-[(6-methoxypyridin-3-yl)methyl]-3,6-diazabicyclo[3.1.1]heptan-3-yl}pyridin-3-yl)pyrazolo[1,5-a]pyridine-3-carbonitrile |
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| Traditional Name | 6-(2-hydroxy-2-methylpropoxy)-4-(6-{6-[(6-methoxypyridin-3-yl)methyl]-3,6-diazabicyclo[3.1.1]heptan-3-yl}pyridin-3-yl)pyrazolo[1,5-a]pyridine-3-carbonitrile |
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| CAS Registry Number | Not Available |
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| SMILES | COC1=NC=C(CN2C3CC2CN(C3)C2=CC=C(C=N2)C2=CC(OCC(C)(C)O)=CN3N=CC(C#N)=C23)C=C1 |
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| InChI Identifier | InChI=1S/C29H31N7O3/c1-29(2,37)18-39-24-9-25(28-21(10-30)13-33-36(28)17-24)20-5-6-26(31-12-20)34-15-22-8-23(16-34)35(22)14-19-4-7-27(38-3)32-11-19/h4-7,9,11-13,17,22-23,37H,8,14-16,18H2,1-3H3 |
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| InChI Key | XIIOFHFUYBLOLW-UHFFFAOYSA-N |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as pyridinylpiperazines. Pyridinylpiperazines are compounds containing a pyridinylpiperazine skeleton, which consists of a pyridine linked (not fused) to a piperazine by a bond by a single bond that is not part of a ring. |
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| Kingdom | Organic compounds |
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| Super Class | Organoheterocyclic compounds |
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| Class | Diazinanes |
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| Sub Class | Piperazines |
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| Direct Parent | Pyridinylpiperazines |
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| Alternative Parents | |
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| Substituents | - N-arylpiperazine
- Pyridinylpiperazine
- Bipyridine
- Pyrazolopyridine
- Dialkylarylamine
- Aralkylamine
- N-alkylpiperazine
- Aminopyridine
- Alkyl aryl ether
- Imidolactam
- Pyridine
- Piperidine
- Heteroaromatic compound
- Tertiary alcohol
- Pyrazole
- Azole
- Tertiary aliphatic amine
- Tertiary amine
- Azetidine
- Azacycle
- Nitrile
- Carbonitrile
- Ether
- Organic nitrogen compound
- Organic oxygen compound
- Organopnictogen compound
- Hydrocarbon derivative
- Organooxygen compound
- Organonitrogen compound
- Amine
- Alcohol
- Aromatic heteropolycyclic compound
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| Molecular Framework | Aromatic heteropolycyclic compounds |
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| External Descriptors | Not Available |
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| Ontology |
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| Physiological effect | Not Available |
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| Disposition | |
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| Process | Not Available |
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| Role | Not Available |
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| Physical Properties |
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| State | Not Available |
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| Experimental Molecular Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Experimental Chromatographic Properties | Not Available |
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| Predicted Molecular Properties | |
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| Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Retention Times Underivatized| Chromatographic Method | Retention Time | Reference |
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| Predicted by Siyang on May 30, 2022 | 10.2083 minutes | 33406817 | | Predicted by Siyang using ReTip algorithm on June 8, 2022 | 2.95 minutes | 32390414 | | Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid | 1069.7 seconds | 40023050 | | Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid | 174.5 seconds | 40023050 | | Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid | 172.5 seconds | 40023050 | | Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid | 164.9 seconds | 40023050 | | RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 80.0 seconds | 40023050 | | Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid | 332.2 seconds | 40023050 | | BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid | 357.1 seconds | 40023050 | | HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate) | 245.5 seconds | 40023050 | | UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid | 711.5 seconds | 40023050 | | BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid | 92.0 seconds | 40023050 | | UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid | 838.7 seconds | 40023050 | | SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 226.7 seconds | 40023050 | | RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 315.0 seconds | 40023050 | | MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate | 357.2 seconds | 40023050 | | KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA | 423.4 seconds | 40023050 | | Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water | 58.9 seconds | 40023050 |
Predicted Kovats Retention IndicesDerivatized| Derivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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| Selpercatinib,1TMS,isomer #1 | COC1=CC=C(CN2C3CC2CN(C2=CC=C(C4=CC(OCC(C)(C)O[Si](C)(C)C)=CN5N=CC(C#N)=C45)C=N2)C3)C=N1 | 4885.4 | Semi standard non polar | 33892256 | | Selpercatinib,1TMS,isomer #1 | COC1=CC=C(CN2C3CC2CN(C2=CC=C(C4=CC(OCC(C)(C)O[Si](C)(C)C)=CN5N=CC(C#N)=C45)C=N2)C3)C=N1 | 4501.1 | Standard non polar | 33892256 | | Selpercatinib,1TMS,isomer #1 | COC1=CC=C(CN2C3CC2CN(C2=CC=C(C4=CC(OCC(C)(C)O[Si](C)(C)C)=CN5N=CC(C#N)=C45)C=N2)C3)C=N1 | 6388.1 | Standard polar | 33892256 | | Selpercatinib,1TBDMS,isomer #1 | COC1=CC=C(CN2C3CC2CN(C2=CC=C(C4=CC(OCC(C)(C)O[Si](C)(C)C(C)(C)C)=CN5N=CC(C#N)=C45)C=N2)C3)C=N1 | 5096.5 | Semi standard non polar | 33892256 | | Selpercatinib,1TBDMS,isomer #1 | COC1=CC=C(CN2C3CC2CN(C2=CC=C(C4=CC(OCC(C)(C)O[Si](C)(C)C(C)(C)C)=CN5N=CC(C#N)=C45)C=N2)C3)C=N1 | 4689.5 | Standard non polar | 33892256 | | Selpercatinib,1TBDMS,isomer #1 | COC1=CC=C(CN2C3CC2CN(C2=CC=C(C4=CC(OCC(C)(C)O[Si](C)(C)C(C)(C)C)=CN5N=CC(C#N)=C45)C=N2)C3)C=N1 | 6331.5 | Standard polar | 33892256 |
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