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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2021-09-24 20:18:15 UTC
Update Date2021-09-24 20:18:16 UTC
HMDB IDHMDB0304865
Secondary Accession NumbersNone
Metabolite Identification
Common NameSelpercatinib
DescriptionSelpercatinib, also known as loxo-292, belongs to the class of organic compounds known as pyridinylpiperazines. Pyridinylpiperazines are compounds containing a pyridinylpiperazine skeleton, which consists of a pyridine linked (not fused) to a piperazine by a bond by a single bond that is not part of a ring. Based on a literature review a significant number of articles have been published on Selpercatinib.
Structure
Thumb
Synonyms
ValueSource
6-(2-Hydroxy-2-methylpropoxy)-4-(6-(6-((6-methoxypyridin-3-yl)methyl)-3,6-diazabicyclo(3.1.1)heptan-3-yl)pyridin-3-yl)pyrazolo(1,5-a)pyridine-3-carbonitrileHMDB
LOXO-292HMDB
SerpercatinibHMDB
Chemical FormulaC29H31N7O3
Average Molecular Weight525.613
Monoisotopic Molecular Weight525.248837886
IUPAC Name6-(2-hydroxy-2-methylpropoxy)-4-(6-{6-[(6-methoxypyridin-3-yl)methyl]-3,6-diazabicyclo[3.1.1]heptan-3-yl}pyridin-3-yl)pyrazolo[1,5-a]pyridine-3-carbonitrile
Traditional Name6-(2-hydroxy-2-methylpropoxy)-4-(6-{6-[(6-methoxypyridin-3-yl)methyl]-3,6-diazabicyclo[3.1.1]heptan-3-yl}pyridin-3-yl)pyrazolo[1,5-a]pyridine-3-carbonitrile
CAS Registry NumberNot Available
SMILES
COC1=NC=C(CN2C3CC2CN(C3)C2=CC=C(C=N2)C2=CC(OCC(C)(C)O)=CN3N=CC(C#N)=C23)C=C1
InChI Identifier
InChI=1S/C29H31N7O3/c1-29(2,37)18-39-24-9-25(28-21(10-30)13-33-36(28)17-24)20-5-6-26(31-12-20)34-15-22-8-23(16-34)35(22)14-19-4-7-27(38-3)32-11-19/h4-7,9,11-13,17,22-23,37H,8,14-16,18H2,1-3H3
InChI KeyXIIOFHFUYBLOLW-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as pyridinylpiperazines. Pyridinylpiperazines are compounds containing a pyridinylpiperazine skeleton, which consists of a pyridine linked (not fused) to a piperazine by a bond by a single bond that is not part of a ring.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassDiazinanes
Sub ClassPiperazines
Direct ParentPyridinylpiperazines
Alternative Parents
Substituents
  • N-arylpiperazine
  • Pyridinylpiperazine
  • Bipyridine
  • Pyrazolopyridine
  • Dialkylarylamine
  • Aralkylamine
  • N-alkylpiperazine
  • Aminopyridine
  • Alkyl aryl ether
  • Imidolactam
  • Pyridine
  • Piperidine
  • Heteroaromatic compound
  • Tertiary alcohol
  • Pyrazole
  • Azole
  • Tertiary aliphatic amine
  • Tertiary amine
  • Azetidine
  • Azacycle
  • Nitrile
  • Carbonitrile
  • Ether
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organonitrogen compound
  • Amine
  • Alcohol
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP3.03ALOGPS
logP3.14ChemAxon
logS-4.2ALOGPS
pKa (Strongest Acidic)14.59ChemAxon
pKa (Strongest Basic)6.28ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count9ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area112.04 ŲChemAxon
Rotatable Bond Count8ChemAxon
Refractivity158.75 m³·mol⁻¹ChemAxon
Polarizability57.3 ųChemAxon
Number of Rings6ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+225.38532859911
AllCCS[M+H-H2O]+223.90532859911
AllCCS[M+Na]+227.10732859911
AllCCS[M+NH4]+226.72732859911
AllCCS[M-H]-215.89132859911
AllCCS[M+Na-2H]-217.4132859911
AllCCS[M+HCOO]-219.22332859911
DeepCCS[M-2H]-250.17830932474
DeepCCS[M+Na]+225.60230932474

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Predicted by Siyang on May 30, 202210.2083 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20222.95 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid1069.7 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid174.5 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid172.5 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid164.9 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid80.0 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid332.2 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid357.1 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)245.5 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid711.5 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid92.0 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid838.7 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid226.7 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid315.0 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate357.2 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA423.4 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water58.9 seconds40023050

Predicted Kovats Retention Indices

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Selpercatinib,1TMS,isomer #1COC1=CC=C(CN2C3CC2CN(C2=CC=C(C4=CC(OCC(C)(C)O[Si](C)(C)C)=CN5N=CC(C#N)=C45)C=N2)C3)C=N14885.4Semi standard non polar33892256
Selpercatinib,1TMS,isomer #1COC1=CC=C(CN2C3CC2CN(C2=CC=C(C4=CC(OCC(C)(C)O[Si](C)(C)C)=CN5N=CC(C#N)=C45)C=N2)C3)C=N14501.1Standard non polar33892256
Selpercatinib,1TMS,isomer #1COC1=CC=C(CN2C3CC2CN(C2=CC=C(C4=CC(OCC(C)(C)O[Si](C)(C)C)=CN5N=CC(C#N)=C45)C=N2)C3)C=N16388.1Standard polar33892256
Selpercatinib,1TBDMS,isomer #1COC1=CC=C(CN2C3CC2CN(C2=CC=C(C4=CC(OCC(C)(C)O[Si](C)(C)C(C)(C)C)=CN5N=CC(C#N)=C45)C=N2)C3)C=N15096.5Semi standard non polar33892256
Selpercatinib,1TBDMS,isomer #1COC1=CC=C(CN2C3CC2CN(C2=CC=C(C4=CC(OCC(C)(C)O[Si](C)(C)C(C)(C)C)=CN5N=CC(C#N)=C45)C=N2)C3)C=N14689.5Standard non polar33892256
Selpercatinib,1TBDMS,isomer #1COC1=CC=C(CN2C3CC2CN(C2=CC=C(C4=CC(OCC(C)(C)O[Si](C)(C)C(C)(C)C)=CN5N=CC(C#N)=C45)C=N2)C3)C=N16331.5Standard polar33892256
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Selpercatinib 10V, Positive-QTOFsplash10-056r-0000090000-3c413427afa8220496522021-10-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Selpercatinib 20V, Positive-QTOFsplash10-004i-0001290000-af870b4ad8088256754e2021-10-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Selpercatinib 40V, Positive-QTOFsplash10-052b-3005900000-026258060064252b06562021-10-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Selpercatinib 10V, Negative-QTOFsplash10-00di-0000190000-11e5c5de2881fce776172021-10-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Selpercatinib 20V, Negative-QTOFsplash10-05gi-0000920000-bbf2a9e09057681d6f6c2021-10-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Selpercatinib 40V, Negative-QTOFsplash10-0006-7409700000-bedf88f261ef57cc4cdb2021-10-22Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID72379991
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkSelpercatinib
METLIN IDNot Available
PubChem Compound134436906
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available