Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2021-09-24 21:07:57 UTC
Update Date2021-09-24 21:07:57 UTC
HMDB IDHMDB0304893
Secondary Accession NumbersNone
Metabolite Identification
Common NamePegvaliase-Pqpz
DescriptionPegvaliase belongs to the class of organic compounds known as l-alpha-amino acids. These are alpha amino acids which have the L-configuration of the alpha-carbon atom. Based on a literature review very few articles have been published on Pegvaliase.
Structure
Thumb
Synonyms
ValueSource
BMN-165MeSH
PalynziqMeSH
Chemical FormulaC15H30N2O5
Average Molecular Weight318.414
Monoisotopic Molecular Weight318.215472074
IUPAC Name(2S)-2-amino-6-[6-(2-methoxyethoxy)hexanamido]hexanoic acid
Traditional Name(2S)-2-amino-6-[6-(2-methoxyethoxy)hexanamido]hexanoic acid
CAS Registry NumberNot Available
SMILES
COCCOCCCCCC(=O)NCCCC[C@H](N)C(O)=O
InChI Identifier
InChI=1S/C15H30N2O5/c1-21-11-12-22-10-6-2-3-8-14(18)17-9-5-4-7-13(16)15(19)20/h13H,2-12,16H2,1H3,(H,17,18)(H,19,20)/t13-/m0/s1
InChI KeyNPOCDVAOUKODSQ-ZDUSSCGKSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as l-alpha-amino acids. These are alpha amino acids which have the L-configuration of the alpha-carbon atom.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentL-alpha-amino acids
Alternative Parents
Substituents
  • L-alpha-amino acid
  • Medium-chain fatty acid
  • Amino fatty acid
  • Fatty amide
  • N-acyl-amine
  • Fatty acyl
  • Fatty acid
  • Carboxamide group
  • Amino acid
  • Secondary carboxylic acid amide
  • Carboxylic acid
  • Dialkyl ether
  • Ether
  • Monocarboxylic acid or derivatives
  • Carbonyl group
  • Primary aliphatic amine
  • Organic oxide
  • Organic nitrogen compound
  • Amine
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organonitrogen compound
  • Organooxygen compound
  • Primary amine
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
DispositionNot Available
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP-1.3ALOGPS
logP-2ChemAxon
logS-2.7ALOGPS
pKa (Strongest Acidic)2.24ChemAxon
pKa (Strongest Basic)9.53ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area110.88 ŲChemAxon
Rotatable Bond Count15ChemAxon
Refractivity83.41 m³·mol⁻¹ChemAxon
Polarizability36.89 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+175.49932859911
AllCCS[M+H-H2O]+173.01532859911
AllCCS[M+Na]+178.44332859911
AllCCS[M+NH4]+177.78832859911
AllCCS[M-H]-180.74532859911
AllCCS[M+Na-2H]-181.55532859911
AllCCS[M+HCOO]-182.57532859911
DeepCCS[M+H]+179.36630932474
DeepCCS[M-H]-176.8930932474
DeepCCS[M-2H]-210.01930932474
DeepCCS[M+Na]+186.37530932474

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Predicted by Siyang on May 30, 20229.8961 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20227.07 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid767.4 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid181.8 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid116.2 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid159.5 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid70.7 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid248.7 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid289.5 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)794.7 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid659.9 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid136.3 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid771.4 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid184.1 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid202.3 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate610.8 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA444.5 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water340.0 seconds40023050

Predicted Kovats Retention Indices

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Pegvaliase-Pqpz,2TMS,isomer #1COCCOCCCCCC(=O)NCCCC[C@H](N[Si](C)(C)C)C(=O)O[Si](C)(C)C2730.2Semi standard non polar33892256
Pegvaliase-Pqpz,2TMS,isomer #1COCCOCCCCCC(=O)NCCCC[C@H](N[Si](C)(C)C)C(=O)O[Si](C)(C)C2699.9Standard non polar33892256
Pegvaliase-Pqpz,2TMS,isomer #1COCCOCCCCCC(=O)NCCCC[C@H](N[Si](C)(C)C)C(=O)O[Si](C)(C)C3312.8Standard polar33892256
Pegvaliase-Pqpz,2TMS,isomer #2COCCOCCCCCC(=O)N(CCCC[C@H](N)C(=O)O[Si](C)(C)C)[Si](C)(C)C2622.8Semi standard non polar33892256
Pegvaliase-Pqpz,2TMS,isomer #2COCCOCCCCCC(=O)N(CCCC[C@H](N)C(=O)O[Si](C)(C)C)[Si](C)(C)C2625.6Standard non polar33892256
Pegvaliase-Pqpz,2TMS,isomer #2COCCOCCCCCC(=O)N(CCCC[C@H](N)C(=O)O[Si](C)(C)C)[Si](C)(C)C3933.6Standard polar33892256
Pegvaliase-Pqpz,2TMS,isomer #3COCCOCCCCCC(=O)N(CCCC[C@H](N[Si](C)(C)C)C(=O)O)[Si](C)(C)C2750.7Semi standard non polar33892256
Pegvaliase-Pqpz,2TMS,isomer #3COCCOCCCCCC(=O)N(CCCC[C@H](N[Si](C)(C)C)C(=O)O)[Si](C)(C)C2665.7Standard non polar33892256
Pegvaliase-Pqpz,2TMS,isomer #3COCCOCCCCCC(=O)N(CCCC[C@H](N[Si](C)(C)C)C(=O)O)[Si](C)(C)C3471.2Standard polar33892256
Pegvaliase-Pqpz,2TMS,isomer #4COCCOCCCCCC(=O)NCCCC[C@@H](C(=O)O)N([Si](C)(C)C)[Si](C)(C)C2885.4Semi standard non polar33892256
Pegvaliase-Pqpz,2TMS,isomer #4COCCOCCCCCC(=O)NCCCC[C@@H](C(=O)O)N([Si](C)(C)C)[Si](C)(C)C2710.5Standard non polar33892256
Pegvaliase-Pqpz,2TMS,isomer #4COCCOCCCCCC(=O)NCCCC[C@@H](C(=O)O)N([Si](C)(C)C)[Si](C)(C)C3460.0Standard polar33892256
Pegvaliase-Pqpz,3TMS,isomer #1COCCOCCCCCC(=O)N(CCCC[C@H](N[Si](C)(C)C)C(=O)O[Si](C)(C)C)[Si](C)(C)C2695.4Semi standard non polar33892256
Pegvaliase-Pqpz,3TMS,isomer #1COCCOCCCCCC(=O)N(CCCC[C@H](N[Si](C)(C)C)C(=O)O[Si](C)(C)C)[Si](C)(C)C2721.0Standard non polar33892256
Pegvaliase-Pqpz,3TMS,isomer #1COCCOCCCCCC(=O)N(CCCC[C@H](N[Si](C)(C)C)C(=O)O[Si](C)(C)C)[Si](C)(C)C3010.4Standard polar33892256
Pegvaliase-Pqpz,3TMS,isomer #2COCCOCCCCCC(=O)NCCCC[C@@H](C(=O)O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C2899.4Semi standard non polar33892256
Pegvaliase-Pqpz,3TMS,isomer #2COCCOCCCCCC(=O)NCCCC[C@@H](C(=O)O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C2753.0Standard non polar33892256
Pegvaliase-Pqpz,3TMS,isomer #2COCCOCCCCCC(=O)NCCCC[C@@H](C(=O)O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C3052.6Standard polar33892256
Pegvaliase-Pqpz,3TMS,isomer #3COCCOCCCCCC(=O)N(CCCC[C@@H](C(=O)O)N([Si](C)(C)C)[Si](C)(C)C)[Si](C)(C)C2857.0Semi standard non polar33892256
Pegvaliase-Pqpz,3TMS,isomer #3COCCOCCCCCC(=O)N(CCCC[C@@H](C(=O)O)N([Si](C)(C)C)[Si](C)(C)C)[Si](C)(C)C2765.1Standard non polar33892256
Pegvaliase-Pqpz,3TMS,isomer #3COCCOCCCCCC(=O)N(CCCC[C@@H](C(=O)O)N([Si](C)(C)C)[Si](C)(C)C)[Si](C)(C)C3188.9Standard polar33892256
Pegvaliase-Pqpz,4TMS,isomer #1COCCOCCCCCC(=O)N(CCCC[C@@H](C(=O)O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C)[Si](C)(C)C2894.8Semi standard non polar33892256
Pegvaliase-Pqpz,4TMS,isomer #1COCCOCCCCCC(=O)N(CCCC[C@@H](C(=O)O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C)[Si](C)(C)C2771.1Standard non polar33892256
Pegvaliase-Pqpz,4TMS,isomer #1COCCOCCCCCC(=O)N(CCCC[C@@H](C(=O)O[Si](C)(C)C)N([Si](C)(C)C)[Si](C)(C)C)[Si](C)(C)C2853.4Standard polar33892256
Pegvaliase-Pqpz,2TBDMS,isomer #1COCCOCCCCCC(=O)NCCCC[C@H](N[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C3185.3Semi standard non polar33892256
Pegvaliase-Pqpz,2TBDMS,isomer #1COCCOCCCCCC(=O)NCCCC[C@H](N[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C3033.4Standard non polar33892256
Pegvaliase-Pqpz,2TBDMS,isomer #1COCCOCCCCCC(=O)NCCCC[C@H](N[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C3347.0Standard polar33892256
Pegvaliase-Pqpz,2TBDMS,isomer #2COCCOCCCCCC(=O)N(CCCC[C@H](N)C(=O)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3105.2Semi standard non polar33892256
Pegvaliase-Pqpz,2TBDMS,isomer #2COCCOCCCCCC(=O)N(CCCC[C@H](N)C(=O)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3001.2Standard non polar33892256
Pegvaliase-Pqpz,2TBDMS,isomer #2COCCOCCCCCC(=O)N(CCCC[C@H](N)C(=O)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3832.7Standard polar33892256
Pegvaliase-Pqpz,2TBDMS,isomer #3COCCOCCCCCC(=O)N(CCCC[C@H](N[Si](C)(C)C(C)(C)C)C(=O)O)[Si](C)(C)C(C)(C)C3214.7Semi standard non polar33892256
Pegvaliase-Pqpz,2TBDMS,isomer #3COCCOCCCCCC(=O)N(CCCC[C@H](N[Si](C)(C)C(C)(C)C)C(=O)O)[Si](C)(C)C(C)(C)C3008.7Standard non polar33892256
Pegvaliase-Pqpz,2TBDMS,isomer #3COCCOCCCCCC(=O)N(CCCC[C@H](N[Si](C)(C)C(C)(C)C)C(=O)O)[Si](C)(C)C(C)(C)C3483.0Standard polar33892256
Pegvaliase-Pqpz,2TBDMS,isomer #4COCCOCCCCCC(=O)NCCCC[C@@H](C(=O)O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3346.2Semi standard non polar33892256
Pegvaliase-Pqpz,2TBDMS,isomer #4COCCOCCCCCC(=O)NCCCC[C@@H](C(=O)O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3040.6Standard non polar33892256
Pegvaliase-Pqpz,2TBDMS,isomer #4COCCOCCCCCC(=O)NCCCC[C@@H](C(=O)O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3446.8Standard polar33892256
Pegvaliase-Pqpz,3TBDMS,isomer #1COCCOCCCCCC(=O)N(CCCC[C@H](N[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3382.6Semi standard non polar33892256
Pegvaliase-Pqpz,3TBDMS,isomer #1COCCOCCCCCC(=O)N(CCCC[C@H](N[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3201.8Standard non polar33892256
Pegvaliase-Pqpz,3TBDMS,isomer #1COCCOCCCCCC(=O)N(CCCC[C@H](N[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3276.8Standard polar33892256
Pegvaliase-Pqpz,3TBDMS,isomer #2COCCOCCCCCC(=O)NCCCC[C@@H](C(=O)O[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3572.1Semi standard non polar33892256
Pegvaliase-Pqpz,3TBDMS,isomer #2COCCOCCCCCC(=O)NCCCC[C@@H](C(=O)O[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3238.1Standard non polar33892256
Pegvaliase-Pqpz,3TBDMS,isomer #2COCCOCCCCCC(=O)NCCCC[C@@H](C(=O)O[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3265.5Standard polar33892256
Pegvaliase-Pqpz,3TBDMS,isomer #3COCCOCCCCCC(=O)N(CCCC[C@@H](C(=O)O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3525.5Semi standard non polar33892256
Pegvaliase-Pqpz,3TBDMS,isomer #3COCCOCCCCCC(=O)N(CCCC[C@@H](C(=O)O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3228.4Standard non polar33892256
Pegvaliase-Pqpz,3TBDMS,isomer #3COCCOCCCCCC(=O)N(CCCC[C@@H](C(=O)O)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3360.4Standard polar33892256
Pegvaliase-Pqpz,4TBDMS,isomer #1COCCOCCCCCC(=O)N(CCCC[C@@H](C(=O)O[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3746.9Semi standard non polar33892256
Pegvaliase-Pqpz,4TBDMS,isomer #1COCCOCCCCCC(=O)N(CCCC[C@@H](C(=O)O[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3393.8Standard non polar33892256
Pegvaliase-Pqpz,4TBDMS,isomer #1COCCOCCCCCC(=O)N(CCCC[C@@H](C(=O)O[Si](C)(C)C(C)(C)C)N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C3214.7Standard polar33892256
Spectra
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDDB12839
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID58172730
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound86278362
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available