Hmdb loader
Record Information
Version5.0
StatusDetected and Quantified
Creation Date2006-08-13 23:38:34 UTC
Update Date2022-03-07 02:49:21 UTC
HMDB IDHMDB0004668
Secondary Accession Numbers
  • HMDB04668
Metabolite Identification
Common Name13-OxoODE
Description13-oxoODE is produced from 13-HODE by a NAD+-dependent dehydrogenase present in rat colonic mucosa. 13-OxoODE has been shown to stimulate cell proliferation when instilled intrarectally in rats. 13-OxoODE has also been detected in preparations of rabbit reticulocyte plasma and mitochondrial membranes, mostly esterified to phospholipids. Production of 13-oxoODE is putatively linked to the maturation of reticulocytes to erythrocytes through the activity of 15-LO.
Structure
Data?1582752311
Synonyms
ValueSource
13-Keto-9Z,11E-octadecadienoic acidChEBI
13-KetoODEChEBI
13-KODEChEBI
13-oxo-ODEChEBI
(9Z,11E)-13-Oxooctadeca-9,11-dienoic acidKegg
13-Keto-9Z,11E-octadecadienoateGenerator
(9Z,11E)-13-Oxooctadeca-9,11-dienoateGenerator
13-KODDAHMDB
13-Keto-9,11,-octadecadienoic acidHMDB
13-oxo-9,11-Octadecadienoic acidHMDB
13-Oxooctadecadienoic acidHMDB
13-OxoODEChEBI
Chemical FormulaC18H30O3
Average Molecular Weight294.429
Monoisotopic Molecular Weight294.219494826
IUPAC Name(9Z,11E)-13-oxooctadeca-9,11-dienoic acid
Traditional Name13-Oxo-ODE
CAS Registry NumberNot Available
SMILES
CCCCCC(=O)\C=C\C=C/CCCCCCCC(O)=O
InChI Identifier
InChI=1S/C18H30O3/c1-2-3-11-14-17(19)15-12-9-7-5-4-6-8-10-13-16-18(20)21/h7,9,12,15H,2-6,8,10-11,13-14,16H2,1H3,(H,20,21)/b9-7-,15-12+
InChI KeyJHXAZBBVQSRKJR-BSZOFBHHSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as lineolic acids and derivatives. These are derivatives of lineolic acid. Lineolic acid is a polyunsaturated omega-6 18 carbon long fatty acid, with two CC double bonds at the 9- and 12-positions.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassLineolic acids and derivatives
Direct ParentLineolic acids and derivatives
Alternative Parents
Substituents
  • Octadecanoid
  • Long-chain fatty acid
  • Unsaturated fatty acid
  • Fatty acid
  • Acryloyl-group
  • Enone
  • Alpha,beta-unsaturated ketone
  • Ketone
  • Monocarboxylic acid or derivatives
  • Carboxylic acid
  • Carboxylic acid derivative
  • Organic oxide
  • Organic oxygen compound
  • Organooxygen compound
  • Hydrocarbon derivative
  • Carbonyl group
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic Properties

Experimental Collision Cross Sections

Adduct TypeData SourceCCS Value (Å2)Reference
[M-H]-Not Available180.433http://allccs.zhulab.cn/database/detail?ID=AllCCS00001899
[M+H]+Not Available179.4http://allccs.zhulab.cn/database/detail?ID=AllCCS00001899
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.0013 g/LALOGPS
logP5.66ALOGPS
logP5.6ChemAxon
logS-5.4ALOGPS
pKa (Strongest Acidic)4.99ChemAxon
pKa (Strongest Basic)-4.6ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area54.37 ŲChemAxon
Rotatable Bond Count14ChemAxon
Refractivity89.14 m³·mol⁻¹ChemAxon
Polarizability36.07 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+181.84330932474
DeepCCS[M-H]-179.48530932474
DeepCCS[M-2H]-212.37130932474
DeepCCS[M+Na]+187.93630932474
AllCCS[M+H]+179.132859911
AllCCS[M+H-H2O]+176.132859911
AllCCS[M+NH4]+181.932859911
AllCCS[M+Na]+182.732859911
AllCCS[M-H]-179.532859911
AllCCS[M+Na-2H]-181.032859911
AllCCS[M+HCOO]-182.732859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
13-OxoODECCCCCC(=O)\C=C\C=C/CCCCCCCC(O)=O3778.8Standard polar33892256
13-OxoODECCCCCC(=O)\C=C\C=C/CCCCCCCC(O)=O2279.9Standard non polar33892256
13-OxoODECCCCCC(=O)\C=C\C=C/CCCCCCCC(O)=O2464.7Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
13-OxoODE,1TMS,isomer #1CCCCCC(=O)/C=C/C=C\CCCCCCCC(=O)O[Si](C)(C)C2506.4Semi standard non polar33892256
13-OxoODE,1TMS,isomer #2CCCCC=C(/C=C/C=C\CCCCCCCC(=O)O)O[Si](C)(C)C2659.4Semi standard non polar33892256
13-OxoODE,2TMS,isomer #1CCCCC=C(/C=C/C=C\CCCCCCCC(=O)O[Si](C)(C)C)O[Si](C)(C)C2643.6Semi standard non polar33892256
13-OxoODE,2TMS,isomer #1CCCCC=C(/C=C/C=C\CCCCCCCC(=O)O[Si](C)(C)C)O[Si](C)(C)C2546.5Standard non polar33892256
13-OxoODE,2TMS,isomer #1CCCCC=C(/C=C/C=C\CCCCCCCC(=O)O[Si](C)(C)C)O[Si](C)(C)C2652.6Standard polar33892256
13-OxoODE,1TBDMS,isomer #1CCCCCC(=O)/C=C/C=C\CCCCCCCC(=O)O[Si](C)(C)C(C)(C)C2756.7Semi standard non polar33892256
13-OxoODE,1TBDMS,isomer #2CCCCC=C(/C=C/C=C\CCCCCCCC(=O)O)O[Si](C)(C)C(C)(C)C2906.7Semi standard non polar33892256
13-OxoODE,2TBDMS,isomer #1CCCCC=C(/C=C/C=C\CCCCCCCC(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3135.4Semi standard non polar33892256
13-OxoODE,2TBDMS,isomer #1CCCCC=C(/C=C/C=C\CCCCCCCC(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C2933.4Standard non polar33892256
13-OxoODE,2TBDMS,isomer #1CCCCC=C(/C=C/C=C\CCCCCCCC(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C2806.0Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 13-OxoODE GC-MS (Non-derivatized) - 70eV, Positivesplash10-004j-6930000000-d10bec81e9ec9e716fa22017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 13-OxoODE GC-MS (1 TMS) - 70eV, Positivesplash10-0g2i-9750000000-bfda7e2eea95619a49f02017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 13-OxoODE GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-OxoODE 10V, Positive-QTOFsplash10-004j-0190000000-a96e4ea1acf25f5bb5a32017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-OxoODE 20V, Positive-QTOFsplash10-056s-5790000000-14707a3a66247416895c2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-OxoODE 40V, Positive-QTOFsplash10-05g3-9720000000-cdeb3fe3585fb2aabaf62017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-OxoODE 10V, Negative-QTOFsplash10-0006-0090000000-09978321bcbe7824cadf2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-OxoODE 20V, Negative-QTOFsplash10-002e-2290000000-e322d98207fbdbed5fce2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-OxoODE 40V, Negative-QTOFsplash10-052f-9430000000-6bf81e4857713e8781c52017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-OxoODE 10V, Negative-QTOFsplash10-0006-0090000000-70cae714b15b662c6aa12021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-OxoODE 20V, Negative-QTOFsplash10-002f-2590000000-dba8b2a106352cfef0822021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-OxoODE 40V, Negative-QTOFsplash10-052f-9530000000-71771e55577a451c8cb42021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-OxoODE 10V, Positive-QTOFsplash10-004j-1490000000-80caae23bc80ab7cea2c2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-OxoODE 20V, Positive-QTOFsplash10-0aba-8940000000-d8f1355540068e4777462021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-OxoODE 40V, Positive-QTOFsplash10-0apm-9200000000-cad11773185d75e4951e2021-09-25Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected and Quantified0.00049 +/- 0.00004 uMAdult (>18 years old)Both
Normal
details
BloodDetected and Quantified0.00482 (0.00414-0.00550) uMAdult (>18 years old)BothNormal details
BloodDetected and Quantified0.00482 +/- 0.00068 uMAdult (>18 years old)Both
Normal
details
BloodDetected and Quantified0.0017 +/- 0.0012 uMAdult (>18 years old)Both
Normal
details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB023396
KNApSAcK IDNot Available
Chemspider ID4949634
KEGG Compound IDC14765
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound6446027
PDB IDNot Available
ChEBI ID68947
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available

Enzymes

General function:
Involved in oxidoreductase activity
Specific function:
Does not exhibit retinol dehydrogenase (RDH) activity in vitro
Gene Name:
RDH13
Uniprot ID:
Q8NBN7
Molecular weight:
35931.8