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Human Metabolome Database Version 3.5

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Showing metabocard for PC(o-20:0/18:3(9Z,12Z,15Z)) (HMDB13440)

Record Information
Version 3.5
Creation Date 2010-03-18 10:07:38 -0600
Update Date 2013-02-08 17:30:14 -0700
HMDB ID HMDB13440
Secondary Accession Numbers None
Metabolite Identification
Common Name PC(o-20:0/18:3(9Z,12Z,15Z))
Description PC(o-20:0/18:3(9Z,12Z,15Z)) is a phosphatidylcholine (PC or GPCho). It is a glycerophospholipid in which a phosphorylcholine moiety occupies a glycerol substitution site. As is the case with diacylglycerols, glycerophosphocholines can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. Fatty acids containing 16, 18 and 20 carbons are the most common. PC(o-20:0/18:3(9Z,12Z,15Z)), in particular, consists of one chain of Arachidyl alcohol at the C-1 position and one chain of a-linolenic acid at the C-2 position. The Arachidyl alcohol moiety is derived from corn oil, while the a-linolenic acid moiety is derived from seed oils, especially canola and soybean oil. Phospholipids, are ubiquitous in nature and are key components of the lipid bilayer of cells, as well as being involved in metabolism and signaling. While most phospholipids have a saturated fatty acid on C-1 and an unsaturated fatty acid on C-2 of the glycerol backbone, the fatty acid distribution at the C-1 and C-2 positions of glycerol within phospholipids is continually in flux, owing to phospholipid degradation and the continuous phospholipid remodeling that occurs while these molecules are in membranes. PCs can be synthesized via three different routes. In one route, choline is activated first by phosphorylation and then by coupling to CDP prior to attachment to phosphatidic acid. PCs can also synthesized by the addition of choline to CDP-activated 1,2-diacylglycerol. A third route to PC synthesis involves the conversion of either PS or PE to PC.
Structure Thumb
Download: MOL | SDF | SMILES | InChI
Display: 2D Structure | 3D Structure
Synonyms
  1. 1-Arachidyl-2-a-linolenoyl-sn-glycero-3-phosphocholine
  2. 1-Arachidyl-2-alpha-linolenoyl-sn-glycero-3-phosphocholine
  3. GPCho(20:0/18:3)
  4. GPCho(20:0/18:3n3)
  5. GPCho(20:0/18:3w3)
  6. GPCho(38:3)
  7. Lecithin
  8. PC ae C38:3
  9. PC(20:0/18:3)
  10. PC(20:0/18:3n3)
  11. PC(20:0/18:3w3)
  12. PC(38:3)
  13. PC(O-38:3)
  14. Phosphatidylcholine(20:0/18:3)
  15. Phosphatidylcholine(20:0/18:3n3)
  16. Phosphatidylcholine(20:0/18:3w3)
  17. Phosphatidylcholine(38:3)
Chemical Formula C46H88NO7P
Average Molecular Weight 798.1672
Monoisotopic Molecular Weight 797.629840687
IUPAC Name (2-{[(2R)-3-(icosyloxy)-2-[(9Z,12Z,15Z)-octadeca-9,12,15-trienoyloxy]propyl phosphonato]oxy}ethyl)trimethylazanium
Traditional IUPAC Name (2-{[(2R)-3-(icosyloxy)-2-[(9Z,12Z,15Z)-octadeca-9,12,15-trienoyloxy]propyl phosphonato]oxy}ethyl)trimethylazanium
CAS Registry Number Not Available
SMILES CCCCCCCCCCCCCCCCCCCCOC[C@]([H])(COP([O-])(=O)OCC[N+](C)(C)C)OC(=O)CCCCCCC\C=C/C\C=C/C\C=C/CC
InChI Identifier InChI=1S/C46H88NO7P/c1-6-8-10-12-14-16-18-20-22-23-24-26-28-30-32-34-36-38-41-51-43-45(44-53-55(49,50)52-42-40-47(3,4)5)54-46(48)39-37-35-33-31-29-27-25-21-19-17-15-13-11-9-7-2/h9,11,15,17,21,25,45H,6-8,10,12-14,16,18-20,22-24,26-44H2,1-5H3/b11-9-,17-15-,25-21-/t45-/m1/s1
InChI Key APWUUZRAVVATRC-GBRUYZQDSA-N
Chemical Taxonomy
Kingdom Organic Compounds
Super Class Lipids
Class Glycerophospholipids
Sub Class Glycerophosphocholines
Other Descriptors
  • Aliphatic Acyclic Compounds
Substituents
  • Acyclic Alkene
  • Carboxylic Acid Ester
  • Choline
  • Dialkyl Ether
  • Fatty Acid Ester
  • Organic Hypophosphite
  • Organic Phosphite
  • Phosphocholine
  • Phosphoethanolamine
  • Phosphoric Acid Ester
  • Quaternary Ammonium Salt
Direct Parent Other Glycerophosphocholines
Ontology
Status Detected and Quantified
Origin
  • Endogenous
  • Food
Biofunction
  • Cell signaling
  • Energy source
  • Fuel and energy storage
  • Fuel or energy source
  • Membrane component
  • Membrane integrity/stability
Application
  • Nutrients
  • Stabilizers
  • Surfactants and Emulsifiers
Cellular locations
  • Extracellular
  • Membrane
Physical Properties
State Solid
Experimental Properties
Property Value Reference
Melting Point Not Available Not Available
Boiling Point Not Available Not Available
Water Solubility Not Available Not Available
LogP Not Available Not Available
Predicted Properties
Property Value Source
Water Solubility 2.420E-05 g/L ALOGPS
LogP 6.42 ALOGPS
LogP 10.08 ChemAxon
LogS -7.55 ALOGPS
pKa (strongest acidic) 1.86 ChemAxon
pKa (strongest basic) -4.1 ChemAxon
Hydrogen Acceptor Count 4 ChemAxon
Hydrogen Donor Count 0 ChemAxon
Polar Surface Area 94.12 A2 ChemAxon
Rotatable Bond Count 43 ChemAxon
Refractivity 247.07 ChemAxon
Polarizability 100.32 ChemAxon
Formal Charge 0 ChemAxon
Physiological Charge 0 ChemAxon
Spectra
Not Available
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biofluid Locations
  • Urine
Tissue Location
  • All Tissues
Pathways Not Available
Normal Concentrations
Biofluid Status Value Age Sex Condition Comments
Urine Detected and Quantified
Article_icon
0.002 (0.0012-0.0028) umol/mmol creatinine Adult (>18 years old) Both Normal by DFI-MS/MS (Biocrates kit)
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease References None
Associated OMIM IDs None
DrugBank ID Not Available
Phenol Explorer Compound ID Not Available
Phenol Explorer Metabolite ID Not Available
FoodDB ID FDB029440
KNApSAcK ID Not Available
Chemspider ID Not Available
KEGG Compound ID Not Available
BioCyc ID Not Available
BiGG ID Not Available
Wikipedia Link Not Available
NuGOwiki Link HMDB13440 Link_out
Metagene Link HMDB13440 Link_out
METLIN ID Not Available
PubChem Compound 52923836 Link_out
PDB ID Not Available
ChEBI ID Not Available
References
Synthesis Reference Not Available
Material Safety Data Sheet (MSDS) Not Available
General References Not Available

Enzymes
Name: Calcium-dependent phospholipase A2
Reactions:
    Gene Name: PLA2G5
    Uniprot ID: P39877 Link_out
    Protein Sequence: FASTA
    Gene Sequence: FASTA
    Name: Group IIF secretory phospholipase A2
    Reactions:
      Gene Name: PLA2G2F
      Uniprot ID: Q9BZM2 Link_out
      Protein Sequence: FASTA
      Gene Sequence: FASTA
      Name: Cytosolic phospholipase A2
      Reactions:
        Gene Name: PLA2G4A
        Uniprot ID: P47712 Link_out
        Protein Sequence: FASTA
        Gene Sequence: FASTA
        Name: Phospholipase A2
        Reactions:
          Gene Name: PLA2G1B
          Uniprot ID: P04054 Link_out
          Protein Sequence: FASTA
          Gene Sequence: FASTA
          Name: Group 10 secretory phospholipase A2
          Reactions:
            Gene Name: PLA2G10
            Uniprot ID: O15496 Link_out
            Protein Sequence: FASTA
            Gene Sequence: FASTA
            Name: Group IIE secretory phospholipase A2
            Reactions:
              Gene Name: PLA2G2E
              Uniprot ID: Q9NZK7 Link_out
              Protein Sequence: FASTA
              Gene Sequence: FASTA
              Name: Group XIIA secretory phospholipase A2
              Reactions:
                Gene Name: PLA2G12A
                Uniprot ID: Q9BZM1 Link_out
                Protein Sequence: FASTA
                Gene Sequence: FASTA
                Name: Phosphatidylcholine-sterol acyltransferase
                Reactions:
                  Gene Name: LCAT
                  Uniprot ID: P04180 Link_out
                  Protein Sequence: FASTA
                  Gene Sequence: FASTA
                  Name: Phospholipase A2, membrane associated
                  Reactions:
                    Gene Name: PLA2G2A
                    Uniprot ID: P14555 Link_out
                    Protein Sequence: FASTA
                    Gene Sequence: FASTA
                    Name: Group IID secretory phospholipase A2
                    Reactions:
                      Gene Name: PLA2G2D
                      Uniprot ID: Q9UNK4 Link_out
                      Protein Sequence: FASTA
                      Gene Sequence: FASTA
                      Name: Phospholipase D2
                      Reactions:
                        Gene Name: PLD2
                        Uniprot ID: O14939 Link_out
                        Protein Sequence: FASTA
                        Gene Sequence: FASTA
                        Name: Phospholipase D1
                        Reactions:
                          Gene Name: PLD1
                          Uniprot ID: Q13393 Link_out
                          Protein Sequence: FASTA
                          Gene Sequence: FASTA
                          Name: Group 3 secretory phospholipase A2
                          Reactions:
                            Gene Name: PLA2G3
                            Uniprot ID: Q9NZ20 Link_out
                            Protein Sequence: FASTA
                            Gene Sequence: FASTA
                            Name: Phosphatidylcholine:ceramide cholinephosphotransferase 2
                            Reactions:
                              Gene Name: SGMS2
                              Uniprot ID: Q8NHU3 Link_out
                              Protein Sequence: FASTA
                              Gene Sequence: FASTA
                              Name: Phosphatidylcholine:ceramide cholinephosphotransferase 1
                              Reactions:
                                Gene Name: SGMS1
                                Uniprot ID: Q86VZ5 Link_out
                                Protein Sequence: FASTA
                                Gene Sequence: FASTA
                                Name: Probable phospholipid-transporting ATPase IG
                                Reactions:
                                  Gene Name: ATP11C
                                  Uniprot ID: Q8NB49 Link_out
                                  Protein Sequence: FASTA
                                  Gene Sequence: FASTA
                                  Name: Probable phospholipid-transporting ATPase IH
                                  Reactions:
                                    Gene Name: ATP11A
                                    Uniprot ID: P98196 Link_out
                                    Protein Sequence: FASTA
                                    Gene Sequence: FASTA
                                    Name: Probable phospholipid-transporting ATPase VA
                                    Reactions:
                                      Gene Name: ATP10A
                                      Uniprot ID: O60312 Link_out
                                      Protein Sequence: FASTA
                                      Gene Sequence: FASTA
                                      Name: Probable phospholipid-transporting ATPase IC
                                      Reactions:
                                        Gene Name: ATP8B1
                                        Uniprot ID: O43520 Link_out
                                        Protein Sequence: FASTA
                                        Gene Sequence: FASTA
                                        Name: Probable phospholipid-transporting ATPase IIA
                                        Reactions:
                                          Gene Name: ATP9A
                                          Uniprot ID: O75110 Link_out
                                          Protein Sequence: FASTA
                                          Gene Sequence: FASTA
                                          Name: Probable phospholipid-transporting ATPase VD
                                          Reactions:
                                            Gene Name: ATP10D
                                            Uniprot ID: Q9P241 Link_out
                                            Protein Sequence: FASTA
                                            Gene Sequence: FASTA
                                            Name: Probable phospholipid-transporting ATPase IB
                                            Reactions:
                                              Gene Name: ATP8A2
                                              Uniprot ID: Q9NTI2 Link_out
                                              Protein Sequence: FASTA
                                              Gene Sequence: FASTA
                                              Name: Probable phospholipid-transporting ATPase IA
                                              Reactions:
                                                Gene Name: ATP8A1
                                                Uniprot ID: Q9Y2Q0 Link_out
                                                Protein Sequence: FASTA
                                                Gene Sequence: FASTA
                                                Name: Probable phospholipid-transporting ATPase IM
                                                Reactions:
                                                  Gene Name: ATP8B4
                                                  Uniprot ID: Q8TF62 Link_out
                                                  Protein Sequence: FASTA
                                                  Gene Sequence: FASTA
                                                  Name: Probable phospholipid-transporting ATPase IF
                                                  Reactions:
                                                    Gene Name: ATP11B
                                                    Uniprot ID: Q9Y2G3 Link_out
                                                    Protein Sequence: FASTA
                                                    Gene Sequence: FASTA
                                                    Name: Probable phospholipid-transporting ATPase IK
                                                    Reactions:
                                                      Gene Name: ATP8B3
                                                      Uniprot ID: O60423 Link_out
                                                      Protein Sequence: FASTA
                                                      Gene Sequence: FASTA
                                                      Name: Lecithin retinol acyltransferase
                                                      Reactions:
                                                        Gene Name: LRAT
                                                        Uniprot ID: O95237 Link_out
                                                        Protein Sequence: FASTA
                                                        Gene Sequence: FASTA
                                                        Name: Phospholipid scramblase 1
                                                        Reactions:
                                                          Gene Name: PLSCR1
                                                          Uniprot ID: O15162 Link_out
                                                          Protein Sequence: FASTA
                                                          Gene Sequence: FASTA
                                                          Name: Phospholipid transfer protein
                                                          Reactions:
                                                            Gene Name: PLTP
                                                            Uniprot ID: P55058 Link_out
                                                            Protein Sequence: FASTA
                                                            Gene Sequence: FASTA
                                                            Name: Cholinephosphotransferase 1
                                                            Reactions:
                                                              Gene Name: CHPT1
                                                              Uniprot ID: Q8WUD6 Link_out
                                                              Protein Sequence: FASTA
                                                              Gene Sequence: FASTA
                                                              Name: Choline/ethanolaminephosphotransferase 1
                                                              Reactions:
                                                                Gene Name: CEPT1
                                                                Uniprot ID: Q9Y6K0 Link_out
                                                                Protein Sequence: FASTA
                                                                Gene Sequence: FASTA
                                                                Name: Lysophospholipid acyltransferase 5
                                                                Reactions:
                                                                  Gene Name: LPCAT3
                                                                  Uniprot ID: Q6P1A2 Link_out
                                                                  Protein Sequence: FASTA
                                                                  Gene Sequence: FASTA
                                                                  Name: Putative inactive group IIC secretory phospholipase A2
                                                                  Reactions:
                                                                    Gene Name: PLA2G2C
                                                                    Uniprot ID: Q5R387 Link_out
                                                                    Protein Sequence: FASTA
                                                                    Name: Lysophosphatidylcholine acyltransferase 1
                                                                    Reactions:
                                                                      Gene Name: LPCAT1
                                                                      Uniprot ID: Q8NF37 Link_out
                                                                      Protein Sequence: FASTA
                                                                      Gene Sequence: FASTA
                                                                      Name: Lysophosphatidylcholine acyltransferase 2
                                                                      Reactions:
                                                                        Gene Name: LPCAT2
                                                                        Uniprot ID: Q7L5N7 Link_out
                                                                        Protein Sequence: FASTA
                                                                        Gene Sequence: FASTA
                                                                        Name: Phospholipase D3
                                                                        Reactions:
                                                                          Gene Name: PLD3
                                                                          Uniprot ID: Q8IV08 Link_out
                                                                          Protein Sequence: FASTA
                                                                          Gene Sequence: FASTA
                                                                          Name: Phospholipase D4
                                                                          Reactions:
                                                                            Gene Name: PLD4
                                                                            Uniprot ID: Q96BZ4 Link_out
                                                                            Protein Sequence: FASTA
                                                                            Gene Sequence: FASTA
                                                                            Name: Phosphatidylcholine transfer protein
                                                                            Reactions:
                                                                              Gene Name: PCTP
                                                                              Uniprot ID: Q9UKL6 Link_out
                                                                              Protein Sequence: FASTA
                                                                              Gene Sequence: FASTA
                                                                              Name: Phospholipid scramblase 2
                                                                              Reactions:
                                                                                Gene Name: PLSCR2
                                                                                Uniprot ID: Q9NRY7 Link_out
                                                                                Protein Sequence: FASTA
                                                                                Gene Sequence: FASTA
                                                                                Name: Phospholipid scramblase 3
                                                                                Reactions:
                                                                                  Gene Name: PLSCR3
                                                                                  Uniprot ID: Q9NRY6 Link_out
                                                                                  Protein Sequence: FASTA
                                                                                  Gene Sequence: FASTA
                                                                                  Name: Phospholipid scramblase 4
                                                                                  Reactions:
                                                                                    Gene Name: PLSCR4
                                                                                    Uniprot ID: Q9NRQ2 Link_out
                                                                                    Protein Sequence: FASTA
                                                                                    Gene Sequence: FASTA
                                                                                    Name: Phospholipid scramblase family member 5
                                                                                    Reactions:
                                                                                      Gene Name: PLSCR5
                                                                                      Uniprot ID: A0PG75 Link_out
                                                                                      Protein Sequence: FASTA
                                                                                      Gene Sequence: FASTA
                                                                                      Name: Probable phospholipid-transporting ATPase VB
                                                                                      Reactions:
                                                                                        Gene Name: ATP10B
                                                                                        Uniprot ID: O94823 Link_out
                                                                                        Protein Sequence: FASTA
                                                                                        Gene Sequence: FASTA
                                                                                        Name: Probable phospholipid-transporting ATPase ID
                                                                                        Reactions:
                                                                                          Gene Name: ATP8B2
                                                                                          Uniprot ID: P98198 Link_out
                                                                                          Protein Sequence: FASTA
                                                                                          Gene Sequence: FASTA