Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:41:19 UTC
Update Date2023-02-21 17:19:55 UTC
HMDB IDHMDB0031152
Secondary Accession Numbers
  • HMDB31152
Metabolite Identification
Common Name(3Z,6Z)-3,6-Nonadienal
Description(3Z,6Z)-3,6-Nonadienal belongs to the class of organic compounds known as medium-chain aldehydes. These are an aldehyde with a chain length containing between 6 and 12 carbon atoms (3Z,6Z)-3,6-Nonadienal is a fat and soap tasting compound (3Z,6Z)-3,6-Nonadienal has been detected, but not quantified in, several different foods, such as japanese walnuts (Juglans ailanthifolia), ryes (Secale cereale), wax apples (Eugenia javanica), dills (Anethum graveolens), and cape gooseberries (Physalis peruviana). This could make (3Z,6Z)-3,6-nonadienal a potential biomarker for the consumption of these foods (3Z,6Z)-3,6-Nonadienal is a primary metabolite. Primary metabolites are metabolically or physiologically essential metabolites. They are directly involved in an organism’s growth, development or reproduction. Based on a literature review very few articles have been published on (3Z,6Z)-3,6-Nonadienal.
Structure
Data?1676999994
Synonyms
ValueSource
(Z,Z)-3,6-NonadienalHMDB
(Z,Z)-3.6-NonadienalHMDB
Chemical FormulaC9H14O
Average Molecular Weight138.2069
Monoisotopic Molecular Weight138.10446507
IUPAC Name(3Z,6Z)-nona-3,6-dienal
Traditional Name3,6-nonadienal
CAS Registry Number21944-83-2
SMILES
CC\C=C/C\C=C/CC=O
InChI Identifier
InChI=1S/C9H14O/c1-2-3-4-5-6-7-8-9-10/h3-4,6-7,9H,2,5,8H2,1H3/b4-3-,7-6-
InChI KeyFIDBXHOCOXRPRO-CWWKMNTPSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as medium-chain aldehydes. These are an aldehyde with a chain length containing between 6 and 12 carbon atoms.
KingdomOrganic compounds
Super ClassOrganic oxygen compounds
ClassOrganooxygen compounds
Sub ClassCarbonyl compounds
Direct ParentMedium-chain aldehydes
Alternative Parents
Substituents
  • Medium-chain aldehyde
  • Alpha-hydrogen aldehyde
  • Organic oxide
  • Hydrocarbon derivative
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Ontology
Physiological effect
Disposition
Biological locationRoute of exposureSource
Process
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling Point201.80 °C. @ 760.00 mm Hg (est)The Good Scents Company Information System
Water Solubility318.8 mg/L @ 25 °C (est)The Good Scents Company Information System
LogP2.870 (est)The Good Scents Company Information System
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.16 g/LALOGPS
logP3.09ALOGPS
logP2.26ChemAxon
logS-3ALOGPS
pKa (Strongest Acidic)18.34ChemAxon
pKa (Strongest Basic)-7ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count1ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area17.07 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity46.18 m³·mol⁻¹ChemAxon
Polarizability16.5 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+134.74231661259
DarkChem[M-H]-133.08631661259
DeepCCS[M+H]+132.6230932474
DeepCCS[M-H]-129.08230932474
DeepCCS[M-2H]-166.36430932474
DeepCCS[M+Na]+141.51830932474
AllCCS[M+H]+133.532859911
AllCCS[M+H-H2O]+129.332859911
AllCCS[M+NH4]+137.432859911
AllCCS[M+Na]+138.532859911
AllCCS[M-H]-136.132859911
AllCCS[M+Na-2H]-138.332859911
AllCCS[M+HCOO]-140.832859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
(3Z,6Z)-3,6-NonadienalCC\C=C/C\C=C/CC=O1540.7Standard polar33892256
(3Z,6Z)-3,6-NonadienalCC\C=C/C\C=C/CC=O1080.7Standard non polar33892256
(3Z,6Z)-3,6-NonadienalCC\C=C/C\C=C/CC=O1123.3Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
(3Z,6Z)-3,6-Nonadienal,1TMS,isomer #1CC/C=C\C/C=C\C=CO[Si](C)(C)C1370.5Semi standard non polar33892256
(3Z,6Z)-3,6-Nonadienal,1TMS,isomer #1CC/C=C\C/C=C\C=CO[Si](C)(C)C1308.6Standard non polar33892256
(3Z,6Z)-3,6-Nonadienal,1TBDMS,isomer #1CC/C=C\C/C=C\C=CO[Si](C)(C)C(C)(C)C1595.2Semi standard non polar33892256
(3Z,6Z)-3,6-Nonadienal,1TBDMS,isomer #1CC/C=C\C/C=C\C=CO[Si](C)(C)C(C)(C)C1507.4Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - (3Z,6Z)-3,6-Nonadienal GC-MS (Non-derivatized) - 70eV, Positivesplash10-0ar3-9200000000-d32ff31ae92e48d852e02017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (3Z,6Z)-3,6-Nonadienal GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (3Z,6Z)-3,6-Nonadienal GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3Z,6Z)-3,6-Nonadienal 10V, Positive-QTOFsplash10-000i-2900000000-83a56dbc2cdaf37b35862016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3Z,6Z)-3,6-Nonadienal 20V, Positive-QTOFsplash10-059i-9500000000-594f16b39326e738308b2016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3Z,6Z)-3,6-Nonadienal 40V, Positive-QTOFsplash10-0ktf-9000000000-34d7fa96d0476aea2d832016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3Z,6Z)-3,6-Nonadienal 10V, Negative-QTOFsplash10-000i-0900000000-70fce8ab480c09dafca62016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3Z,6Z)-3,6-Nonadienal 20V, Negative-QTOFsplash10-000i-2900000000-049314eb2b475835d1bd2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3Z,6Z)-3,6-Nonadienal 40V, Negative-QTOFsplash10-0006-9000000000-39d8086427150d7ada642016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3Z,6Z)-3,6-Nonadienal 10V, Negative-QTOFsplash10-000i-0900000000-928b413704490084a3032021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3Z,6Z)-3,6-Nonadienal 20V, Negative-QTOFsplash10-052r-2900000000-3b4dcfbcfeb411868a042021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3Z,6Z)-3,6-Nonadienal 40V, Negative-QTOFsplash10-014i-9000000000-410d47477c8e064a00292021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3Z,6Z)-3,6-Nonadienal 10V, Positive-QTOFsplash10-00or-9000000000-5c178ce7b474b508222a2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3Z,6Z)-3,6-Nonadienal 20V, Positive-QTOFsplash10-014i-9000000000-a8c49c3f09ace4f69ae32021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3Z,6Z)-3,6-Nonadienal 40V, Positive-QTOFsplash10-016r-9000000000-29908e26953dbe12ce4d2021-09-22Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)2022-08-20Wishart LabView Spectrum

IR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+)2023-02-03FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+)2023-02-03FELIX labView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB003165
KNApSAcK IDNot Available
Chemspider ID4509638
KEGG Compound IDC16323
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound5352808
PDB IDNot Available
ChEBI ID80444
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1551851
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .