| Record Information |
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| Version | 5.0 |
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| Status | Expected but not Quantified |
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| Creation Date | 2012-09-11 17:45:21 UTC |
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| Update Date | 2023-02-21 17:21:18 UTC |
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| HMDB ID | HMDB0031769 |
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| Secondary Accession Numbers | |
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| Metabolite Identification |
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| Common Name | Carbendazim |
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| Description | Carbendazim, also known as bavistin or kolfugo, belongs to the class of organic compounds known as 2-benzimidazolylcarbamic acid esters. These are aromatic heteropolycyclic compounds that contain a carbamic acid ester group, which is N-linked to the C2-atom of a benzimidazole moiety. Carbendazim is a secondary metabolite. Secondary metabolites are metabolically or physiologically non-essential metabolites that may serve a role as defense or signalling molecules. In some cases they are simply molecules that arise from the incomplete metabolism of other secondary metabolites. Based on a literature review a small amount of articles have been published on Carbendazim. |
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| Structure | COC(=O)NC1=NC2=CC=CC=C2N1 InChI=1S/C9H9N3O2/c1-14-9(13)12-8-10-6-4-2-3-5-7(6)11-8/h2-5H,1H3,(H2,10,11,12,13) |
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| Synonyms | | Value | Source |
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| 1H-Benzimidazol-2-ylcarbamic acid methyl ester | ChEBI | | 2-(Methoxy-carbonylamino)-benzimidazol | ChEBI | | 2-(Methoxycarbonylamino)-benzimidazole | ChEBI | | 2-(Methoxycarbonylamino)benzimidazole | ChEBI | | 2-Benzimidazolecarbamic acid methyl ester | ChEBI | | BMC | ChEBI | | Carbendazime | ChEBI | | MBC | ChEBI | | Mecarzole | ChEBI | | Methyl 2-benzimidazolecarbamate | ChEBI | | Methyl benzimidazol-2-ylcarbamate | ChEBI | | 1H-Benzimidazol-2-ylcarbamate methyl ester | Generator | | 2-Benzimidazolecarbamate methyl ester | Generator | | Methyl 2-benzimidazolecarbamic acid | Generator | | Methyl benzimidazol-2-ylcarbamic acid | Generator | | 1H-Benzimidazol-2-yl-carbamic acid, methyl ester | HMDB | | 1H-Benzimidazol-2-ylcarbamic acid, methyl ester | HMDB | | 1H-Benzimidazole-2-carbamic acid, methyl ester | HMDB | | 2-(Carbomethoxyamino)benzimidazole | HMDB | | 2-(Methoxycarbamoyl)benzimidazole | HMDB | | 2-(Methoxycarboxamido)benzimidazole | HMDB | | 2-Benzimidazolecarbamic acid, methyl ester | HMDB | | 2-Bezimidazolecarbamic acid methyl ester | HMDB | | 2-MBC | HMDB | | 2-Methyl benzimidazolecarbamate | HMDB | | 2-[(Methoxycarbonyl)amino]benzimidazole | HMDB | | a 118 (Pesticide) | HMDB | | Agrizim | HMDB | | Antibac MF | HMDB | | Battal | HMDB | | Bavistan | HMDB | | Bavistin | HMDB | | Bavistin 25Sd | HMDB | | Bavistin 3460 | HMDB | | Bavistin 50Sd | HMDB | | Bavistin FL | HMDB | | Bavistine | HMDB | | BCM | HMDB | | BCM (Fungicide) | HMDB | | Bengard | HMDB | | Benzimidazole carbamate de methyle | HMDB | | Benzimidazole-2-carbamic acid, methyl ester | HMDB | | Benzimidazolecarbamate methyl ester | HMDB | | Benzimidazolecarbamic | HMDB | | Bercema-bitosen | HMDB | | Bitosen | HMDB | | BMC? | HMDB | | BMK | HMDB | | BMK (Fungicide) | HMDB | | Carbamic acid, 1H-benzimidazol-2-yl-, methyl ester | HMDB | | Carbamic acid, 1H-benzimidazolyl-, methyl ester | HMDB | | Carbamic acid, N-1H-benzimidazol-2-yl-, methyl ester | HMDB | | Carben VL | HMDB | | Carbendazin | HMDB | | Carbendazine | HMDB | | Carbendazol | HMDB | | Carbendazol, jmaf | HMDB | | Carbendazole | HMDB | | Carbendazym | HMDB | | Carbendazyme | HMDB | | Custos | HMDB | | Delsene | HMDB | | Delsene 10 | HMDB | | Derosal | HMDB | | Derosal 60PM | HMDB | | Equitdazin | HMDB | | Falicarben | HMDB | | Funaben | HMDB | | Funaben 3 | HMDB | | Funaben 50 | HMDB | | Fungisol | HMDB | | Fungoxan | HMDB | | Garbenda | HMDB | | Ipo y | HMDB | | Jkatein | HMDB | | Jkstein | HMDB | | Karben | HMDB | | Karben flo stefes | HMDB | | Karben stefes flo | HMDB | | Kemdazin | HMDB | | Kid pest project (carbendazim) (see also carbendazim) | HMDB | | Kolfugo | HMDB | | Kolfugo 25 FW | HMDB | | Kolfugo 25FW | HMDB | | Kolfugo extra | HMDB | | Medamine | HMDB | | Mekarzole | HMDB | | Methoxybenzimidazole-2-carbamic acid | HMDB | | Methyl 1H-benzimidazol-2-ylcarbamate | HMDB | | Methyl 1H-benzimidazol-2-ylcarbamate (9ci) | HMDB | | Methyl 1H-benzimidazol-2-ylcarbamate, 9ci | HMDB | | Methyl 1H-benzimidazole-2-carbamate | HMDB | | Methyl 1H-benzimidazolylcarbamate | HMDB | | Methyl 2-benzimidazil carbamate | HMDB | | Methyl 2-benzimidazolylcarbamate | HMDB | | Methyl benzimidazolecarbamate | HMDB | | Methyl benzimidazolylcarbamate | HMDB | | Methyl N-2-benzimidazolecarbamate | HMDB | | Methyl-2-benzimidazole carbamate | HMDB | | Methyl-N-(2-benzimidazolyl)carbamate | HMDB | | Methylbenzimidazole-2-ylcarbamate | HMDB | | MYCO | HMDB | | Olgin | HMDB | | Olgin (fungicide) | HMDB | | Pillarstin | HMDB | | Preparation g 665 | HMDB | | Preventol BCM | HMDB | | Protek | HMDB | | Sarfun | HMDB | | SPIN | HMDB | | Spin (pesticide) | HMDB | | Stein | HMDB | | Stempor | HMDB | | Subeej | HMDB | | Supercarb | HMDB | | Thicoper | HMDB | | Triticol | HMDB | | Zhiweiling | HMDB | | Mecarzole mononitrate | HMDB | | Mecarzole monophosphate | HMDB | | Mecarzole monosulfate | HMDB | | Mecarzole monohydrochloride | HMDB | | Mecarzole monosodium salt | HMDB | | Mecarzole monophosphinate | HMDB | | Mecarzole triphosphinate | HMDB | | Carbendazim phosphate | MeSH |
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| Chemical Formula | C9H9N3O2 |
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| Average Molecular Weight | 191.1867 |
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| Monoisotopic Molecular Weight | 191.069476547 |
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| IUPAC Name | methyl N-(1H-1,3-benzodiazol-2-yl)carbamate |
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| Traditional Name | carbendazim |
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| CAS Registry Number | 10605-21-7 |
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| SMILES | COC(=O)NC1=NC2=CC=CC=C2N1 |
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| InChI Identifier | InChI=1S/C9H9N3O2/c1-14-9(13)12-8-10-6-4-2-3-5-7(6)11-8/h2-5H,1H3,(H2,10,11,12,13) |
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| InChI Key | TWFZGCMQGLPBSX-UHFFFAOYSA-N |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as 2-benzimidazolylcarbamic acid esters. These are aromatic heteropolycyclic compounds that contain a carbamic acid ester group, which is N-linked to the C2-atom of a benzimidazole moiety. |
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| Kingdom | Organic compounds |
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| Super Class | Organoheterocyclic compounds |
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| Class | Benzimidazoles |
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| Sub Class | 2-benzimidazolylcarbamic acid esters |
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| Direct Parent | 2-benzimidazolylcarbamic acid esters |
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| Alternative Parents | |
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| Substituents | - 2-benzimidazolylcarbamic acid ester
- Benzenoid
- Azole
- Imidazole
- Carbamic acid ester
- Heteroaromatic compound
- Carbonic acid derivative
- Azacycle
- Organic oxide
- Organopnictogen compound
- Organooxygen compound
- Organonitrogen compound
- Organic oxygen compound
- Carbonyl group
- Organic nitrogen compound
- Hydrocarbon derivative
- Aromatic heteropolycyclic compound
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| Molecular Framework | Aromatic heteropolycyclic compounds |
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| External Descriptors | |
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| Ontology |
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| Physiological effect | |
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| Disposition | |
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| Process | Not Available |
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| Role | |
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| Physical Properties |
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| State | Solid |
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| Experimental Molecular Properties | |
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| Experimental Chromatographic Properties | Not Available |
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| Predicted Molecular Properties | |
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| Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Retention Times Underivatized| Chromatographic Method | Retention Time | Reference |
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| Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022. | 4.6 minutes | 32390414 | | Predicted by Siyang on May 30, 2022 | 9.6088 minutes | 33406817 | | Predicted by Siyang using ReTip algorithm on June 8, 2022 | 1.57 minutes | 32390414 | | AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid | 41.0 seconds | 40023050 | | Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid | 1534.8 seconds | 40023050 | | Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid | 276.8 seconds | 40023050 | | Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid | 92.3 seconds | 40023050 | | Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid | 172.4 seconds | 40023050 | | RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 83.8 seconds | 40023050 | | Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid | 400.7 seconds | 40023050 | | BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid | 359.1 seconds | 40023050 | | HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate) | 384.4 seconds | 40023050 | | UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid | 705.3 seconds | 40023050 | | BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid | 305.7 seconds | 40023050 | | UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid | 917.6 seconds | 40023050 | | SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 207.7 seconds | 40023050 | | RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 227.6 seconds | 40023050 | | MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate | 375.9 seconds | 40023050 | | KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA | 195.9 seconds | 40023050 | | Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water | 145.4 seconds | 40023050 |
Predicted Kovats Retention IndicesUnderivatizedDerivatized| Derivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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| Carbendazim,1TMS,isomer #1 | COC(=O)N(C1=NC2=CC=CC=C2[NH]1)[Si](C)(C)C | 1852.8 | Semi standard non polar | 33892256 | | Carbendazim,1TMS,isomer #1 | COC(=O)N(C1=NC2=CC=CC=C2[NH]1)[Si](C)(C)C | 1823.7 | Standard non polar | 33892256 | | Carbendazim,1TMS,isomer #2 | COC(=O)NC1=NC2=CC=CC=C2N1[Si](C)(C)C | 1952.8 | Semi standard non polar | 33892256 | | Carbendazim,1TMS,isomer #2 | COC(=O)NC1=NC2=CC=CC=C2N1[Si](C)(C)C | 1888.0 | Standard non polar | 33892256 | | Carbendazim,2TMS,isomer #1 | COC(=O)N(C1=NC2=CC=CC=C2N1[Si](C)(C)C)[Si](C)(C)C | 1986.7 | Semi standard non polar | 33892256 | | Carbendazim,2TMS,isomer #1 | COC(=O)N(C1=NC2=CC=CC=C2N1[Si](C)(C)C)[Si](C)(C)C | 1912.0 | Standard non polar | 33892256 | | Carbendazim,1TBDMS,isomer #1 | COC(=O)N(C1=NC2=CC=CC=C2[NH]1)[Si](C)(C)C(C)(C)C | 2110.8 | Semi standard non polar | 33892256 | | Carbendazim,1TBDMS,isomer #1 | COC(=O)N(C1=NC2=CC=CC=C2[NH]1)[Si](C)(C)C(C)(C)C | 2021.7 | Standard non polar | 33892256 | | Carbendazim,1TBDMS,isomer #2 | COC(=O)NC1=NC2=CC=CC=C2N1[Si](C)(C)C(C)(C)C | 2151.5 | Semi standard non polar | 33892256 | | Carbendazim,1TBDMS,isomer #2 | COC(=O)NC1=NC2=CC=CC=C2N1[Si](C)(C)C(C)(C)C | 2085.1 | Standard non polar | 33892256 | | Carbendazim,2TBDMS,isomer #1 | COC(=O)N(C1=NC2=CC=CC=C2N1[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C | 2334.5 | Semi standard non polar | 33892256 | | Carbendazim,2TBDMS,isomer #1 | COC(=O)N(C1=NC2=CC=CC=C2N1[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C | 2301.8 | Standard non polar | 33892256 |
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