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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 18:27:55 UTC
Update Date2022-03-07 02:53:49 UTC
HMDB IDHMDB0033709
Secondary Accession Numbers
  • HMDB33709
Metabolite Identification
Common NameDesglucocoroloside
DescriptionDesglucocoroloside belongs to the class of organic compounds known as cardenolide glycosides and derivatives. Cardenolide glycosides and derivatives are compounds containing a carbohydrate glycosidically bound to the cardenolide moiety. Desglucocoroloside is an extremely weak basic (essentially neutral) compound (based on its pKa).
Structure
Data?1563862448
Synonyms
ValueSource
DeglucocorolosideHMDB
Digitoxigenin boivinosideHMDB
Chemical FormulaC29H44O7
Average Molecular Weight504.6555
Monoisotopic Molecular Weight504.308703762
IUPAC Name4-{5-[(4,5-dihydroxy-6-methyloxan-2-yl)oxy]-11-hydroxy-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-14-yl}-2,5-dihydrofuran-2-one
Traditional Name4-{5-[(4,5-dihydroxy-6-methyloxan-2-yl)oxy]-11-hydroxy-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-14-yl}-5H-furan-2-one
CAS Registry Number57361-72-5
SMILES
CC1OC(CC(O)C1O)OC1CCC2(C)C(CCC3C2CCC2(C)C(CCC32O)C2=CC(=O)OC2)C1
InChI Identifier
InChI=1S/C29H44O7/c1-16-26(32)23(30)14-25(35-16)36-19-6-9-27(2)18(13-19)4-5-22-21(27)7-10-28(3)20(8-11-29(22,28)33)17-12-24(31)34-15-17/h12,16,18-23,25-26,30,32-33H,4-11,13-15H2,1-3H3
InChI KeyNQOMDNMTNVQXRR-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as cardenolide glycosides and derivatives. Cardenolide glycosides and derivatives are compounds containing a carbohydrate glycosidically bound to the cardenolide moiety.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassSteroids and steroid derivatives
Sub ClassSteroid lactones
Direct ParentCardenolide glycosides and derivatives
Alternative ParentsNot Available
SubstituentsNot Available
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point190 - 192 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.0071 g/LALOGPS
logP2.09ALOGPS
logP3.24ChemAxon
logS-4.8ALOGPS
pKa (Strongest Acidic)7.18ChemAxon
pKa (Strongest Basic)0.24ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area105.45 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity133 m³·mol⁻¹ChemAxon
Polarizability57.37 ųChemAxon
Number of Rings6ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+216.16131661259
DarkChem[M-H]-205.98531661259
DeepCCS[M-2H]-239.14930932474
DeepCCS[M+Na]+214.5430932474
AllCCS[M+H]+224.032859911
AllCCS[M+H-H2O]+222.632859911
AllCCS[M+NH4]+225.332859911
AllCCS[M+Na]+225.732859911
AllCCS[M-H]-210.032859911
AllCCS[M+Na-2H]-212.232859911
AllCCS[M+HCOO]-214.832859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
DesglucocorolosideCC1OC(CC(O)C1O)OC1CCC2(C)C(CCC3C2CCC2(C)C(CCC32O)C2=CC(=O)OC2)C13367.7Standard polar33892256
DesglucocorolosideCC1OC(CC(O)C1O)OC1CCC2(C)C(CCC3C2CCC2(C)C(CCC32O)C2=CC(=O)OC2)C13807.8Standard non polar33892256
DesglucocorolosideCC1OC(CC(O)C1O)OC1CCC2(C)C(CCC3C2CCC2(C)C(CCC32O)C2=CC(=O)OC2)C14603.2Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Desglucocoroloside,1TMS,isomer #1CC1OC(OC2CCC3(C)C(CCC4C3CCC3(C)C(C5=CC(=O)OC5)CCC43O)C2)CC(O[Si](C)(C)C)C1O4333.9Semi standard non polar33892256
Desglucocoroloside,1TMS,isomer #2CC1OC(OC2CCC3(C)C(CCC4C3CCC3(C)C(C5=CC(=O)OC5)CCC43O)C2)CC(O)C1O[Si](C)(C)C4349.7Semi standard non polar33892256
Desglucocoroloside,1TMS,isomer #3CC1OC(OC2CCC3(C)C(CCC4C3CCC3(C)C(C5=CC(=O)OC5)CCC43O[Si](C)(C)C)C2)CC(O)C1O4352.5Semi standard non polar33892256
Desglucocoroloside,2TMS,isomer #1CC1OC(OC2CCC3(C)C(CCC4C3CCC3(C)C(C5=CC(=O)OC5)CCC43O[Si](C)(C)C)C2)CC(O[Si](C)(C)C)C1O4290.4Semi standard non polar33892256
Desglucocoroloside,2TMS,isomer #2CC1OC(OC2CCC3(C)C(CCC4C3CCC3(C)C(C5=CC(=O)OC5)CCC43O)C2)CC(O[Si](C)(C)C)C1O[Si](C)(C)C4296.1Semi standard non polar33892256
Desglucocoroloside,2TMS,isomer #3CC1OC(OC2CCC3(C)C(CCC4C3CCC3(C)C(C5=CC(=O)OC5)CCC43O[Si](C)(C)C)C2)CC(O)C1O[Si](C)(C)C4325.1Semi standard non polar33892256
Desglucocoroloside,3TMS,isomer #1CC1OC(OC2CCC3(C)C(CCC4C3CCC3(C)C(C5=CC(=O)OC5)CCC43O[Si](C)(C)C)C2)CC(O[Si](C)(C)C)C1O[Si](C)(C)C4227.5Semi standard non polar33892256
Desglucocoroloside,1TBDMS,isomer #1CC1OC(OC2CCC3(C)C(CCC4C3CCC3(C)C(C5=CC(=O)OC5)CCC43O)C2)CC(O[Si](C)(C)C(C)(C)C)C1O4551.2Semi standard non polar33892256
Desglucocoroloside,1TBDMS,isomer #2CC1OC(OC2CCC3(C)C(CCC4C3CCC3(C)C(C5=CC(=O)OC5)CCC43O)C2)CC(O)C1O[Si](C)(C)C(C)(C)C4584.2Semi standard non polar33892256
Desglucocoroloside,1TBDMS,isomer #3CC1OC(OC2CCC3(C)C(CCC4C3CCC3(C)C(C5=CC(=O)OC5)CCC43O[Si](C)(C)C(C)(C)C)C2)CC(O)C1O4563.7Semi standard non polar33892256
Desglucocoroloside,2TBDMS,isomer #1CC1OC(OC2CCC3(C)C(CCC4C3CCC3(C)C(C5=CC(=O)OC5)CCC43O[Si](C)(C)C(C)(C)C)C2)CC(O[Si](C)(C)C(C)(C)C)C1O4698.6Semi standard non polar33892256
Desglucocoroloside,2TBDMS,isomer #2CC1OC(OC2CCC3(C)C(CCC4C3CCC3(C)C(C5=CC(=O)OC5)CCC43O)C2)CC(O[Si](C)(C)C(C)(C)C)C1O[Si](C)(C)C(C)(C)C4732.5Semi standard non polar33892256
Desglucocoroloside,2TBDMS,isomer #3CC1OC(OC2CCC3(C)C(CCC4C3CCC3(C)C(C5=CC(=O)OC5)CCC43O[Si](C)(C)C(C)(C)C)C2)CC(O)C1O[Si](C)(C)C(C)(C)C4742.1Semi standard non polar33892256
Desglucocoroloside,3TBDMS,isomer #1CC1OC(OC2CCC3(C)C(CCC4C3CCC3(C)C(C5=CC(=O)OC5)CCC43O[Si](C)(C)C(C)(C)C)C2)CC(O[Si](C)(C)C(C)(C)C)C1O[Si](C)(C)C(C)(C)C4848.5Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Desglucocoroloside GC-MS (Non-derivatized) - 70eV, Positivesplash10-004r-2326900000-474ce68d2e2667946e422017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Desglucocoroloside GC-MS (2 TMS) - 70eV, Positivesplash10-0f89-4322219000-175918452b9751d817a02017-10-06Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Desglucocoroloside 10V, Positive-QTOFsplash10-0a70-0006920000-d8bc2ba3b2263214225b2015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Desglucocoroloside 20V, Positive-QTOFsplash10-0a59-0209100000-3fd536fc4d27315db3ad2015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Desglucocoroloside 40V, Positive-QTOFsplash10-001l-1935000000-3a126c6e98278976e0c42015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Desglucocoroloside 10V, Negative-QTOFsplash10-0zfr-0107790000-c25493a7ce294cf4ae772015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Desglucocoroloside 20V, Negative-QTOFsplash10-0aba-1109200000-089c3fad5e1dd6cb23762015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Desglucocoroloside 40V, Negative-QTOFsplash10-05fr-2009000000-ec2f4eadaa37b5c0c6572015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Desglucocoroloside 10V, Negative-QTOFsplash10-0uk9-0008690000-1eaf0c345e01dae5e8bb2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Desglucocoroloside 20V, Negative-QTOFsplash10-0fk9-4209340000-4a654cedf2a8fc0419422021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Desglucocoroloside 40V, Negative-QTOFsplash10-0007-9107100000-4f790fd3734debe89aaa2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Desglucocoroloside 10V, Positive-QTOFsplash10-0a4r-0029870000-27a7470fe23fa1bb6a992021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Desglucocoroloside 20V, Positive-QTOFsplash10-0avr-0387930000-676e2bd7f70fe43d73092021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Desglucocoroloside 40V, Positive-QTOFsplash10-05r0-6944000000-935852a59ee1e9945acd2021-09-22Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB011825
KNApSAcK IDNot Available
Chemspider ID10444697
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound15559187
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.