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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2012-09-12 01:05:31 UTC

Update Date

2022-03-07 02:56:16 UTC

HMDB ID

HMDB0039588

Secondary Accession Numbers

HMDB39588

Metabolite Identification

Common Name

Panaxynol

Description

Panaxynol belongs to the class of organic compounds known as long-chain fatty alcohols. These are fatty alcohols that have an aliphatic tail of 13 to 21 carbon atoms. Based on a literature review a small amount of articles have been published on Panaxynol.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0039588
     RDKit          3D
Panaxynol
 42 41  0  0  0  0  0  0  0  0999 V2000
    7.1959   -1.0417    0.4586 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6043   -2.2187    0.3798 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3294   -2.3469   -0.3574 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5192   -3.3248    0.2142 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5833   -1.0733   -0.2232 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9710   -0.0418   -0.0965 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2668    1.1762    0.0618 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6800    2.2273    0.1871 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9826    3.5061    0.3179 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5008    3.2730    0.2590 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0263    2.0642    0.1095 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5037    1.8946    0.0580 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9350    1.2711   -1.2607 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4350    1.1003   -1.3100 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9483    0.2197   -0.2187 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3624   -1.1758   -0.2734 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9082   -2.0335    0.8480 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4187   -2.1317    0.7206 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7975   -0.1409    0.0065 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1463   -0.8965    0.9964 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0325   -3.0883    0.8425 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4774   -2.5662   -1.4446 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1595   -3.9622   -0.4608 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2726    3.9742    1.2789 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2929    4.2166   -0.4804 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1781    4.1059    0.3393 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6268    1.2118    0.0265 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0110    2.8633    0.1629 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8127    1.2124    0.8822 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6055    1.9080   -2.1066 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4876    0.2614   -1.3868 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7295    0.6957   -2.2915 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8697    2.1161   -1.1447 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0467    0.1068   -0.3694 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7621    0.6167    0.7932 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2587   -1.1730   -0.1582 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6069   -1.6919   -1.2252 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6766   -1.5752    1.8350 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5129   -3.0541    0.7339 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8369   -2.9823    1.2882 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8758   -1.1838    1.0425 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6307   -2.3189   -0.3670 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  3  0
  6  7  1  0
  7  8  3  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
  1 19  1  0
  1 20  1  0
  2 21  1  0
  3 22  1  0
  4 23  1  0
  9 24  1  0
  9 25  1  0
 10 26  1  0
 11 27  1  0
 12 28  1  0
 12 29  1  0
 13 30  1  0
 13 31  1  0
 14 32  1  0
 14 33  1  0
 15 34  1  0
 15 35  1  0
 16 36  1  0
 16 37  1  0
 17 38  1  0
 17 39  1  0
 18 40  1  0
 18 41  1  0
 18 42  1  0
M  END


  Mrv0541 02241216502D          

 18 17  0  0  0  0            999 V2000
   -4.5311   -1.8038    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5311   -1.0018    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8093   -0.6007    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8093    0.1997    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1676   -1.0018    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4458   -0.6007    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7240   -1.0018    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0022   -0.6007    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0022    0.1997    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3605    0.6007    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3605    0.1997    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0824    0.6007    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8042    0.1997    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4458    0.6007    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1676    0.1997    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8895    0.6007    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8895    1.4028    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5311    1.8038    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  3  0  0  0  0
  6  7  1  0  0  0  0
  7  8  3  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0039588

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCCCC\C=C\CC#CC#CC(O)C=C

> <INCHI_IDENTIFIER>
InChI=1S/C17H24O/c1-3-5-6-7-8-9-10-11-12-13-14-15-16-17(18)4-2/h4,10-11,17-18H,2-3,5-9,12H2,1H3/b11-10+

> <INCHI_KEY>
UGJAEDFOKNAMQD-ZHACJKMWSA-N

> <FORMULA>
C17H24O

> <MOLECULAR_WEIGHT>
244.3719

> <EXACT_MASS>
244.18271539

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_AVERAGE_POLARIZABILITY>
31.855801554597413

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(9E)-heptadeca-1,9-dien-4,6-diyn-3-ol

> <ALOGPS_LOGP>
5.78

> <JCHEM_LOGP>
5.449993287000001

> <ALOGPS_LOGS>
-4.89

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.289410263002587

> <JCHEM_PKA_STRONGEST_BASIC>
-3.547011950962667

> <JCHEM_POLAR_SURFACE_AREA>
20.23

> <JCHEM_REFRACTIVITY>
81.2642

> <JCHEM_ROTATABLE_BOND_COUNT>
11

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
3.18e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
falcarinol

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0039588
     RDKit          3D
Panaxynol
 42 41  0  0  0  0  0  0  0  0999 V2000
    7.1959   -1.0417    0.4586 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6043   -2.2187    0.3798 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3294   -2.3469   -0.3574 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5192   -3.3248    0.2142 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5833   -1.0733   -0.2232 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9710   -0.0418   -0.0965 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2668    1.1762    0.0618 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6800    2.2273    0.1871 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9826    3.5061    0.3179 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5008    3.2730    0.2590 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0263    2.0642    0.1095 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5037    1.8946    0.0580 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9350    1.2711   -1.2607 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4350    1.1003   -1.3100 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9483    0.2197   -0.2187 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3624   -1.1758   -0.2734 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9082   -2.0335    0.8480 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4187   -2.1317    0.7206 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7975   -0.1409    0.0065 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1463   -0.8965    0.9964 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0325   -3.0883    0.8425 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4774   -2.5662   -1.4446 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1595   -3.9622   -0.4608 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2726    3.9742    1.2789 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2929    4.2166   -0.4804 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1781    4.1059    0.3393 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6268    1.2118    0.0265 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0110    2.8633    0.1629 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8127    1.2124    0.8822 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6055    1.9080   -2.1066 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4876    0.2614   -1.3868 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7295    0.6957   -2.2915 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8697    2.1161   -1.1447 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0467    0.1068   -0.3694 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7621    0.6167    0.7932 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2587   -1.1730   -0.1582 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6069   -1.6919   -1.2252 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6766   -1.5752    1.8350 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5129   -3.0541    0.7339 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8369   -2.9823    1.2882 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8758   -1.1838    1.0425 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6307   -2.3189   -0.3670 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  3  0
  6  7  1  0
  7  8  3  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
  1 19  1  0
  1 20  1  0
  2 21  1  0
  3 22  1  0
  4 23  1  0
  9 24  1  0
  9 25  1  0
 10 26  1  0
 11 27  1  0
 12 28  1  0
 12 29  1  0
 13 30  1  0
 13 31  1  0
 14 32  1  0
 14 33  1  0
 15 34  1  0
 15 35  1  0
 16 36  1  0
 16 37  1  0
 17 38  1  0
 17 39  1  0
 18 40  1  0
 18 41  1  0
 18 42  1  0
M  END

HEADER    PROTEIN                                 24-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-FEB-12         0                                  
HETATM    1  C   UNK     0      -8.458  -3.367   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -8.458  -1.870   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -7.111  -1.121   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      -7.111   0.373   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0      -5.913  -1.870   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -4.565  -1.121   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -3.218  -1.870   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -1.871  -1.121   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -1.871   0.373   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.673   1.121   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.673   0.373   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.020   1.121   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.368   0.373   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.565   1.121   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.913   0.373   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       7.260   1.121   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       7.260   2.619   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       8.458   3.367   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17                                                            
MASTER        0    0    0    0    0    0    0    0   18    0   34    0
END

COMPND    HMDB0039588
HETATM    1  C1  UNL     1       7.196  -1.042   0.459  1.00  0.00           C  
HETATM    2  C2  UNL     1       6.604  -2.219   0.380  1.00  0.00           C  
HETATM    3  C3  UNL     1       5.329  -2.347  -0.357  1.00  0.00           C  
HETATM    4  O1  UNL     1       4.519  -3.325   0.214  1.00  0.00           O  
HETATM    5  C4  UNL     1       4.583  -1.073  -0.223  1.00  0.00           C  
HETATM    6  C5  UNL     1       3.971  -0.042  -0.096  1.00  0.00           C  
HETATM    7  C6  UNL     1       3.267   1.176   0.062  1.00  0.00           C  
HETATM    8  C7  UNL     1       2.680   2.227   0.187  1.00  0.00           C  
HETATM    9  C8  UNL     1       1.983   3.506   0.318  1.00  0.00           C  
HETATM   10  C9  UNL     1       0.501   3.273   0.259  1.00  0.00           C  
HETATM   11  C10 UNL     1      -0.026   2.064   0.110  1.00  0.00           C  
HETATM   12  C11 UNL     1      -1.504   1.895   0.058  1.00  0.00           C  
HETATM   13  C12 UNL     1      -1.935   1.271  -1.261  1.00  0.00           C  
HETATM   14  C13 UNL     1      -3.435   1.100  -1.310  1.00  0.00           C  
HETATM   15  C14 UNL     1      -3.948   0.220  -0.219  1.00  0.00           C  
HETATM   16  C15 UNL     1      -3.362  -1.176  -0.273  1.00  0.00           C  
HETATM   17  C16 UNL     1      -3.908  -2.033   0.848  1.00  0.00           C  
HETATM   18  C17 UNL     1      -5.419  -2.132   0.721  1.00  0.00           C  
HETATM   19  H1  UNL     1       6.797  -0.141   0.006  1.00  0.00           H  
HETATM   20  H2  UNL     1       8.146  -0.896   0.996  1.00  0.00           H  
HETATM   21  H3  UNL     1       7.033  -3.088   0.842  1.00  0.00           H  
HETATM   22  H4  UNL     1       5.477  -2.566  -1.445  1.00  0.00           H  
HETATM   23  H5  UNL     1       4.160  -3.962  -0.461  1.00  0.00           H  
HETATM   24  H6  UNL     1       2.273   3.974   1.279  1.00  0.00           H  
HETATM   25  H7  UNL     1       2.293   4.217  -0.480  1.00  0.00           H  
HETATM   26  H8  UNL     1      -0.178   4.106   0.339  1.00  0.00           H  
HETATM   27  H9  UNL     1       0.627   1.212   0.026  1.00  0.00           H  
HETATM   28  H10 UNL     1      -2.011   2.863   0.163  1.00  0.00           H  
HETATM   29  H11 UNL     1      -1.813   1.212   0.882  1.00  0.00           H  
HETATM   30  H12 UNL     1      -1.606   1.908  -2.107  1.00  0.00           H  
HETATM   31  H13 UNL     1      -1.488   0.261  -1.387  1.00  0.00           H  
HETATM   32  H14 UNL     1      -3.729   0.696  -2.292  1.00  0.00           H  
HETATM   33  H15 UNL     1      -3.870   2.116  -1.145  1.00  0.00           H  
HETATM   34  H16 UNL     1      -5.047   0.107  -0.369  1.00  0.00           H  
HETATM   35  H17 UNL     1      -3.762   0.617   0.793  1.00  0.00           H  
HETATM   36  H18 UNL     1      -2.259  -1.173  -0.158  1.00  0.00           H  
HETATM   37  H19 UNL     1      -3.607  -1.692  -1.225  1.00  0.00           H  
HETATM   38  H20 UNL     1      -3.677  -1.575   1.835  1.00  0.00           H  
HETATM   39  H21 UNL     1      -3.513  -3.054   0.734  1.00  0.00           H  
HETATM   40  H22 UNL     1      -5.837  -2.982   1.288  1.00  0.00           H  
HETATM   41  H23 UNL     1      -5.876  -1.184   1.043  1.00  0.00           H  
HETATM   42  H24 UNL     1      -5.631  -2.319  -0.367  1.00  0.00           H  
CONECT    1    2    2   19   20
CONECT    2    3   21
CONECT    3    4    5   22
CONECT    4   23
CONECT    5    6    6    6
CONECT    6    7
CONECT    7    8    8    8
CONECT    8    9
CONECT    9   10   24   25
CONECT   10   11   11   26
CONECT   11   12   27
CONECT   12   13   28   29
CONECT   13   14   30   31
CONECT   14   15   32   33
CONECT   15   16   34   35
CONECT   16   17   36   37
CONECT   17   18   38   39
CONECT   18   40   41   42
END

HMDB0039588
     RDKit          3D
Panaxynol
 42 41  0  0  0  0  0  0  0  0999 V2000
    7.1959   -1.0417    0.4586 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6043   -2.2187    0.3798 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3294   -2.3469   -0.3574 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5192   -3.3248    0.2142 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5833   -1.0733   -0.2232 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9710   -0.0418   -0.0965 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2668    1.1762    0.0618 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6800    2.2273    0.1871 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9826    3.5061    0.3179 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5008    3.2730    0.2590 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0263    2.0642    0.1095 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5037    1.8946    0.0580 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9350    1.2711   -1.2607 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4350    1.1003   -1.3100 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9483    0.2197   -0.2187 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3624   -1.1758   -0.2734 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9082   -2.0335    0.8480 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4187   -2.1317    0.7206 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7975   -0.1409    0.0065 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1463   -0.8965    0.9964 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0325   -3.0883    0.8425 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4774   -2.5662   -1.4446 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1595   -3.9622   -0.4608 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2726    3.9742    1.2789 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2929    4.2166   -0.4804 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1781    4.1059    0.3393 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6268    1.2118    0.0265 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0110    2.8633    0.1629 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8127    1.2124    0.8822 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6055    1.9080   -2.1066 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4876    0.2614   -1.3868 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7295    0.6957   -2.2915 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8697    2.1161   -1.1447 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0467    0.1068   -0.3694 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7621    0.6167    0.7932 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2587   -1.1730   -0.1582 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6069   -1.6919   -1.2252 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6766   -1.5752    1.8350 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5129   -3.0541    0.7339 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8369   -2.9823    1.2882 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8758   -1.1838    1.0425 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6307   -2.3189   -0.3670 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  3  0
  6  7  1  0
  7  8  3  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
  1 19  1  0
  1 20  1  0
  2 21  1  0
  3 22  1  0
  4 23  1  0
  9 24  1  0
  9 25  1  0
 10 26  1  0
 11 27  1  0
 12 28  1  0
 12 29  1  0
 13 30  1  0
 13 31  1  0
 14 32  1  0
 14 33  1  0
 15 34  1  0
 15 35  1  0
 16 36  1  0
 16 37  1  0
 17 38  1  0
 17 39  1  0
 18 40  1  0
 18 41  1  0
 18 42  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
(3S,9Z)-1,9-Heptadecadiene-4,6-diyn-3-ol	HMDB
(Z)-(-)-1,9-Heptadecadiene-4,6-diyne-3-ol	HMDB
Falcarinol	HMDB
Falcarinol, (Z)-isomer	MeSH, HMDB
Panaxynol	MeSH

Chemical Formula

C₁₇H₂₄O

Average Molecular Weight

244.3719

Monoisotopic Molecular Weight

244.18271539

IUPAC Name

(9E)-heptadeca-1,9-dien-4,6-diyn-3-ol

Traditional Name

falcarinol

CAS Registry Number

81203-57-8

SMILES

CCCCCCC\C=C\CC#CC#CC(O)C=C

InChI Identifier

InChI=1S/C17H24O/c1-3-5-6-7-8-9-10-11-12-13-14-15-16-17(18)4-2/h4,10-11,17-18H,2-3,5-9,12H2,1H3/b11-10+

InChI Key

UGJAEDFOKNAMQD-ZHACJKMWSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as long-chain fatty alcohols. These are fatty alcohols that have an aliphatic tail of 13 to 21 carbon atoms.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty alcohols

Direct Parent

Long-chain fatty alcohols

Alternative Parents

Substituents

Long chain fatty alcohol
Secondary alcohol
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Alcohol
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Cellular substructure

Excreta

Biofluid or Excreta

Urine (HMDB: HMDB0039588)

Route of exposure

Enteral

Ingestion (HMDB: HMDB0039588)

Source

Endogenous

Endogenous (HMDB: HMDB0039588)

Plant

Plant (HMDB: HMDB0039588)

Animal

Animal (HMDB: HMDB0039588)

Exogenous

Food

Food (HMDB: HMDB0039588)

Vegetable

Root vegetable

Carrot (FooDB: FOOD00245)
Wild carrot (FooDB: FOOD00072)

Process

Naturally occurring process

Biological process

Chemical reaction

Lipid Peroxidation (HMDB: HMDB0039588)

Biochemical pathway

Metabolic pathway

Fatty Acid Metabolism (HMDB: HMDB0039588)

Lipid metabolism pathway (HMDB: HMDB0039588)

Cellular process

Cell signaling (HMDB: HMDB0039588)

Biochemical process

Lipid transport (HMDB: HMDB0039588)

Role

Biological role

Energy source (HMDB: HMDB0039588)
Crustacicide (HMDB: HMDB0039588)

Industrial application

Manufacturing industry

Material processing agent

Fluid processing agent

Surfactant

Surfactant (HMDB: HMDB0039588)

Agriculture

Pesticide (HMDB: HMDB0039588)

Indirect biological role

Metabotoxin

Neurotoxin (HMDB: HMDB0039588)

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
Water Solubility	0.0032 g/L	ALOGPS
logP	5.78	ALOGPS
logP	5.45	ChemAxon
logS	-4.9	ALOGPS
pKa (Strongest Acidic)	13.29	ChemAxon
pKa (Strongest Basic)	-3.5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	20.23 Å²	ChemAxon
Rotatable Bond Count	11	ChemAxon
Refractivity	81.26 m³·mol⁻¹	ChemAxon
Polarizability	31.86 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DarkChem	[M+H]+	168.315	31661259
DarkChem	[M-H]-	167.508	31661259
DeepCCS	[M+H]+	158.235	30932474
DeepCCS	[M-H]-	155.432	30932474
DeepCCS	[M-2H]-	191.005	30932474
DeepCCS	[M+Na]+	166.808	30932474
AllCCS	[M+H]+	167.3	32859911
AllCCS	[M+H-H2O]+	163.8	32859911
AllCCS	[M+NH4]+	170.6	32859911
AllCCS	[M+Na]+	171.5	32859911
AllCCS	[M-H]-	166.9	32859911
AllCCS	[M+Na-2H]-	168.0	32859911
AllCCS	[M+HCOO]-	169.5	32859911

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter)). Predicted by Afia on May 17, 2022.	9.6 minutes	32390414
Predicted by Siyang on May 30, 2022	19.1061 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	2.7 minutes	32390414
AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid	30.4 seconds	40023050
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	2729.9 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	524.6 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	212.0 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	314.5 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	494.4 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	925.3 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	853.9 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	95.5 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	1785.6 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	513.4 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	1615.3 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	621.3 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	355.4 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	536.8 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	557.5 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	8.0 seconds	40023050

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
Panaxynol	CCCCCCC\C=C\CC#CC#CC(O)C=C	3028.0	Standard polar	33892256
Panaxynol	CCCCCCC\C=C\CC#CC#CC(O)C=C	2001.6	Standard non polar	33892256
Panaxynol	CCCCCCC\C=C\CC#CC#CC(O)C=C	2034.5	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
Panaxynol,1TMS,isomer #1	C=CC(C#CC#CC/C=C/CCCCCCC)O[Si](C)(C)C	2116.1	Semi standard non polar	33892256
Panaxynol,1TBDMS,isomer #1	C=CC(C#CC#CC/C=C/CCCCCCC)O[Si](C)(C)C(C)(C)C	2328.5	Semi standard non polar	33892256

Spectra

Biological Properties

Cellular Locations

Extracellular
Membrane

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

KNApSAcK ID

Chemspider ID

KEGG Compound ID

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

5353620

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Teng CM, Kuo SC, Ko FN, Lee JC, Lee LG, Chen SC, Huang TF: Antiplatelet actions of panaxynol and ginsenosides isolated from ginseng. Biochim Biophys Acta. 1989 Mar 24;990(3):315-20. [PubMed:2923911 ]
Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
(). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.

Showing metabocard for Panaxynol (HMDB0039588)

MOL for HMDB0039588 (Panaxynol)

3D MOL for HMDB0039588 (Panaxynol)

3D SDF for HMDB0039588 (Panaxynol)

3D-SDF for HMDB0039588 (Panaxynol)

PDB for HMDB0039588 (Panaxynol)

3D PDB for HMDB0039588 (Panaxynol)

SMILES for HMDB0039588 (Panaxynol)

INCHI for HMDB0039588 (Panaxynol)

Structure for HMDB0039588 (Panaxynol)

3D Structure for HMDB0039588 (Panaxynol)

Predicted Collision Cross Sections

Predicted Retention Times

Underivatized

Predicted Kovats Retention Indices

Underivatized

Derivatized