Hmdb loader
Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2013-06-15 18:24:53 UTC
Update Date2021-09-14 15:47:54 UTC
HMDB IDHMDB0060636
Secondary Accession Numbers
  • HMDB60636
Metabolite Identification
Common NameMalathion dicarboxylic acid
DescriptionMalathion dicarboxylic acid is a metabolite of malathion. Malathion is an organophosphate parasympathomimetic which binds irreversibly to cholinesterase. Malathion is an insecticide of relatively low human toxicity; however, a 2010 study has shown that children with higher levels of organophosphate pesticide metabolites in their urine are more likely to have attention deficit hyperactivity disorder. In the former USSR it was known as carbophos, in New Zealand and Australia as maldison and in South Africa as mercaptothion. (Wikipedia)
Structure
Data?1563866085
Synonyms
ValueSource
Malathion dicarboxylateGenerator
Lamivudine-triphosphoric acidHMDB
Chemical FormulaC6H11O6PS2
Average Molecular Weight274.252
Monoisotopic Molecular Weight273.973465976
IUPAC Name2-{[dimethoxy(sulfanylidene)-λ⁵-phosphanyl]sulfanyl}butanedioic acid
Traditional Name2-{[dimethoxy(sulfanylidene)-λ⁵-phosphanyl]sulfanyl}butanedioic acid
CAS Registry NumberNot Available
SMILES
COP(=S)(OC)SC(CC(O)=O)C(O)=O
InChI Identifier
InChI=1S/C6H11O6PS2/c1-11-13(14,12-2)15-4(6(9)10)3-5(7)8/h4H,3H2,1-2H3,(H,7,8)(H,9,10)
InChI KeyNIUNKPWHNGMQRE-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as thia fatty acids. These are fatty acid derivatives obtained by insertion of a sulfur atom at specific positions in the chain.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassFatty acids and conjugates
Direct ParentThia fatty acids
Alternative Parents
Substituents
  • Thia fatty acid
  • Dicarboxylic acid or derivatives
  • Dithiophosphate s-ester
  • Dithiophosphate o-ester
  • Organic dithiophosphate
  • Sulfenyl compound
  • Organothiophosphorus compound
  • Carboxylic acid
  • Carboxylic acid derivative
  • Carbonyl group
  • Organic oxygen compound
  • Organosulfur compound
  • Organooxygen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility2.08 g/LALOGPS
logP0.84ALOGPS
logP0.85ChemAxon
logS-2.1ALOGPS
pKa (Strongest Acidic)4ChemAxon
Physiological Charge-2ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area93.06 ŲChemAxon
Rotatable Bond Count7ChemAxon
Refractivity59.15 m³·mol⁻¹ChemAxon
Polarizability23.25 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+160.96831661259
DarkChem[M-H]-155.331661259
DeepCCS[M+H]+149.59530932474
DeepCCS[M-H]-146.27830932474
DeepCCS[M-2H]-183.27330932474
DeepCCS[M+Na]+158.86930932474
AllCCS[M+H]+146.532859911
AllCCS[M+H-H2O]+143.932859911
AllCCS[M+NH4]+149.032859911
AllCCS[M+Na]+149.732859911
AllCCS[M-H]-153.532859911
AllCCS[M+Na-2H]-154.532859911
AllCCS[M+HCOO]-155.732859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.3.38 minutes32390414
Predicted by Siyang on May 30, 202210.6424 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20223.91 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid1123.8 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid283.8 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid76.1 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid166.3 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid47.6 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid243.3 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid326.5 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)218.7 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid641.1 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid205.4 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid1046.0 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid221.5 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid209.1 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate596.9 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA222.4 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water402.7 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Malathion dicarboxylic acidCOP(=S)(OC)SC(CC(O)=O)C(O)=O3181.2Standard polar33892256
Malathion dicarboxylic acidCOP(=S)(OC)SC(CC(O)=O)C(O)=O1765.5Standard non polar33892256
Malathion dicarboxylic acidCOP(=S)(OC)SC(CC(O)=O)C(O)=O2111.1Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Malathion dicarboxylic acid,1TMS,isomer #1COP(=S)(OC)SC(CC(=O)O[Si](C)(C)C)C(=O)O2021.8Semi standard non polar33892256
Malathion dicarboxylic acid,1TMS,isomer #2COP(=S)(OC)SC(CC(=O)O)C(=O)O[Si](C)(C)C1997.4Semi standard non polar33892256
Malathion dicarboxylic acid,2TMS,isomer #1COP(=S)(OC)SC(CC(=O)O[Si](C)(C)C)C(=O)O[Si](C)(C)C2009.3Semi standard non polar33892256
Malathion dicarboxylic acid,1TBDMS,isomer #1COP(=S)(OC)SC(CC(=O)O[Si](C)(C)C(C)(C)C)C(=O)O2254.6Semi standard non polar33892256
Malathion dicarboxylic acid,1TBDMS,isomer #2COP(=S)(OC)SC(CC(=O)O)C(=O)O[Si](C)(C)C(C)(C)C2225.0Semi standard non polar33892256
Malathion dicarboxylic acid,2TBDMS,isomer #1COP(=S)(OC)SC(CC(=O)O[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C2422.1Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Malathion dicarboxylic acid GC-MS (Non-derivatized) - 70eV, Positivesplash10-05xu-5890000000-6557719b56fb3f44f0d32017-09-20Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Malathion dicarboxylic acid GC-MS (2 TMS) - 70eV, Positivesplash10-0fmr-9345200000-ad5c09316784677c4f3c2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Malathion dicarboxylic acid GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Malathion dicarboxylic acid 10V, Positive-QTOFsplash10-0m0t-0890000000-e76529c960e5b33592bf2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Malathion dicarboxylic acid 20V, Positive-QTOFsplash10-00di-9260000000-4c31a18aea9cead77bd22017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Malathion dicarboxylic acid 40V, Positive-QTOFsplash10-0udi-1900000000-e83cc21cc62be4fb516e2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Malathion dicarboxylic acid 10V, Negative-QTOFsplash10-00di-0190000000-fbb20cdfeb3fabf724aa2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Malathion dicarboxylic acid 20V, Negative-QTOFsplash10-03di-0490000000-d497185002b89ac812702017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Malathion dicarboxylic acid 40V, Negative-QTOFsplash10-03mj-0930000000-23755c1cd50f527765af2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Malathion dicarboxylic acid 10V, Positive-QTOFsplash10-00di-0900000000-8fb73d917ddfc54af7012021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Malathion dicarboxylic acid 20V, Positive-QTOFsplash10-00di-1900000000-70a3a236d1db41ba4fbe2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Malathion dicarboxylic acid 40V, Positive-QTOFsplash10-00di-0900000000-d5ecd73eeb5bfe9c05eb2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Malathion dicarboxylic acid 10V, Negative-QTOFsplash10-00di-0900000000-5de3ae3c049e46a763722021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Malathion dicarboxylic acid 20V, Negative-QTOFsplash10-00di-1900000000-408b7921d5d5e4b6bcee2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Malathion dicarboxylic acid 40V, Negative-QTOFsplash10-0a4i-1900000000-bd720cdebbd03a6ccb032021-10-12Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
Biospecimen Locations
  • Blood
  • Urine
Tissue Locations
  • Kidney
  • Liver
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodExpected but not QuantifiedNot QuantifiedNot AvailableNot AvailableNormal
      Not Available
details
BloodDetected but not QuantifiedNot QuantifiedAdult (>18 years old)BothNormal details
UrineExpected but not QuantifiedNot QuantifiedNot AvailableNot AvailableNormal
      Not Available
details
UrineDetected but not QuantifiedNot QuantifiedAdult (>18 years old)BothNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID13827
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound75607486
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.