Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2013-07-04 18:54:01 UTC
Update Date2021-09-14 15:18:01 UTC
HMDB IDHMDB0060706
Secondary Accession Numbers
  • HMDB60706
Metabolite Identification
Common Name13-Demethyl tacrolimus
Description13-Demethyl tacrolimus is a metabolite of tacrolimus. Tacrolimus (also FK-506 or fujimycin, trade names Prograf, Advagraf, Protopic) is an immunosuppressive drug that is mainly used after allogeneic organ transplant to reduce the activity of the patient's immune system and so lower the risk of organ rejection. It is also used in a topical preparation in the treatment of atopic dermatitis, severe refractory uveitis after bone marrow transplants, exacerbations of minimal change disease, and the skin condition vitiligo. (Wikipedia )
Structure
Data?1563866094
Synonyms
ValueSource
5-FluoracilHMDB
5-Fluoropyrimidine-2,4-dioneHMDB
5-FUHMDB
FluorouraciloHMDB
FluorouracilumHMDB
5-FluorouracilHMDB
AdrucilHMDB
CaracHMDB
FluoroplexHMDB
5-FU medacHMDB
5-Fluorouracil-biosynHMDB
5FUHMDB
Dermatech brand OF fluorouracilHMDB
EfudexHMDB
Fluoro uracile icnHMDB
Fluorouracil gryHMDB
Fluorouracil monopotassium saltHMDB
Neocorp brand OF fluorouracilHMDB
Roche brand OF fluorouracilHMDB
Teva brand OF fluorouracilHMDB
5 FU medacHMDB
5 HU hexalHMDB
5-HU hexalHMDB
Dakota, fluorouracileHMDB
EfudixHMDB
Fluorouracil-gryHMDB
Fluorouracile dakotaHMDB
Haemato brand OF fluorouracilHMDB
Haemato fuHMDB
ICN brand OF fluorouracilHMDB
NeofluorHMDB
5 Fluorouracil biosynHMDB
5-FU lederleHMDB
CSP Brand OF fluorouracilHMDB
Dakota brand OF fluorouracilHMDB
Ferrer brand OF fluorouracilHMDB
Fluoro-uracile icnHMDB
Fluorouracil mononitrateHMDB
Fluorouracil monosodium saltHMDB
Fluorouracil teva brandHMDB
Fluorouracilo ferrer farHMDB
FluracedylHMDB
OnkofluorHMDB
Pharmachemie brand OF fluorouracil monosodium saltHMDB
Biosyn brand OF fluorouracilHMDB
5 FU lederleHMDB
5 FluorouracilHMDB
Allergan brand OF fluorouracilHMDB
Dermik brand OF fluorouracilHMDB
Fluorouracil potassium saltHMDB
FluoruracilHMDB
FlurodexHMDB
Gry brand OF fluorouracilHMDB
Haemato-fuHMDB
Hexal brand OF fluorouracilHMDB
Onkoworks brand OF fluorouracilHMDB
RibofluorHMDB
Riemser brand OF fluorouracilHMDB
Medac brand OF fluorouracilHMDB
Ribosepharm brand OF fluorouracilHMDB
Chemical FormulaC43H67NO12
Average Molecular Weight789.9916
Monoisotopic Molecular Weight789.466326613
IUPAC Name(1R,9S,12S,13R,14S,17R,18Z,21S,23S,24S,25S,27R)-1,14,25-trihydroxy-12-[(1E)-1-[(1R,3R,4R)-4-hydroxy-3-methoxycyclohexyl]prop-1-en-2-yl]-23-methoxy-13,19,21,27-tetramethyl-17-(prop-2-en-1-yl)-11,28-dioxa-4-azatricyclo[22.3.1.0⁴,⁹]octacos-18-ene-2,3,10,16-tetrone
Traditional Name(1R,9S,12S,13R,14S,17R,18Z,21S,23S,24S,25S,27R)-1,14,25-trihydroxy-12-[(1E)-1-[(1R,3R,4R)-4-hydroxy-3-methoxycyclohexyl]prop-1-en-2-yl]-23-methoxy-13,19,21,27-tetramethyl-17-(prop-2-en-1-yl)-11,28-dioxa-4-azatricyclo[22.3.1.0⁴,⁹]octacos-18-ene-2,3,10,16-tetrone
CAS Registry NumberNot Available
SMILES
[H][C@]12O[C@](O)([C@H](C)C[C@@H]1O)C(=O)C(=O)N1CCCC[C@H]1C(=O)O[C@@H]([C@H](C)[C@@H](O)CC(=O)[C@H](CC=C)\C=C(C)/C[C@H](C)C[C@@H]2OC)C(\C)=C\[C@@H]1CC[C@@H](O)[C@@H](C1)OC
InChI Identifier
InChI=1S/C43H67NO12/c1-9-12-30-18-24(2)17-25(3)19-37(54-8)39-35(48)21-27(5)43(52,56-39)40(49)41(50)44-16-11-10-13-31(44)42(51)55-38(28(6)33(46)23-34(30)47)26(4)20-29-14-15-32(45)36(22-29)53-7/h9,18,20,25,27-33,35-39,45-46,48,52H,1,10-17,19,21-23H2,2-8H3/b24-18-,26-20+/t25-,27+,28+,29-,30+,31-,32+,33-,35-,36+,37-,38+,39-,43+/m0/s1
InChI KeyOGJRKILIPRVJFS-GOJJZGEOSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as macrolide lactams. These are cyclic polyketides containing both a cyclic amide and a cyclic ester group.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassMacrolide lactams
Sub ClassNot Available
Direct ParentMacrolide lactams
Alternative Parents
Substituents
  • Macrolide lactam
  • Alpha-amino acid ester
  • Macrolide
  • Alpha-amino acid or derivatives
  • Cyclohexanol
  • Oxane
  • Piperidine
  • Cyclic alcohol
  • Tertiary carboxylic acid amide
  • Cyclic ketone
  • Secondary alcohol
  • Carboxamide group
  • Carboxylic acid ester
  • Hemiacetal
  • Ketone
  • Lactam
  • Lactone
  • Organoheterocyclic compound
  • Polyol
  • Carboxylic acid derivative
  • Azacycle
  • Dialkyl ether
  • Ether
  • Oxacycle
  • Monocarboxylic acid or derivatives
  • Organopnictogen compound
  • Alcohol
  • Carbonyl group
  • Organic nitrogen compound
  • Organooxygen compound
  • Organonitrogen compound
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.0071 g/LALOGPS
logP2.49ALOGPS
logP4.95ChemAxon
logS-5ALOGPS
pKa (Strongest Acidic)9.96ChemAxon
pKa (Strongest Basic)-2.9ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count11ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area189.36 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity210.87 m³·mol⁻¹ChemAxon
Polarizability86.08 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M-2H]-303.22330932474
DeepCCS[M+Na]+276.99730932474
AllCCS[M+H]+268.132859911
AllCCS[M+H-H2O]+267.432859911
AllCCS[M+NH4]+268.732859911
AllCCS[M+Na]+268.832859911
AllCCS[M-H]-259.932859911
AllCCS[M+Na-2H]-266.632859911
AllCCS[M+HCOO]-273.932859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
13-Demethyl tacrolimus[H][C@]12O[C@](O)([C@H](C)C[C@@H]1O)C(=O)C(=O)N1CCCC[C@H]1C(=O)O[C@@H]([C@H](C)[C@@H](O)CC(=O)[C@H](CC=C)\C=C(C)/C[C@H](C)C[C@@H]2OC)C(\C)=C\[C@@H]1CC[C@@H](O)[C@@H](C1)OC4620.1Standard polar33892256
13-Demethyl tacrolimus[H][C@]12O[C@](O)([C@H](C)C[C@@H]1O)C(=O)C(=O)N1CCCC[C@H]1C(=O)O[C@@H]([C@H](C)[C@@H](O)CC(=O)[C@H](CC=C)\C=C(C)/C[C@H](C)C[C@@H]2OC)C(\C)=C\[C@@H]1CC[C@@H](O)[C@@H](C1)OC4790.2Standard non polar33892256
13-Demethyl tacrolimus[H][C@]12O[C@](O)([C@H](C)C[C@@H]1O)C(=O)C(=O)N1CCCC[C@H]1C(=O)O[C@@H]([C@H](C)[C@@H](O)CC(=O)[C@H](CC=C)\C=C(C)/C[C@H](C)C[C@@H]2OC)C(\C)=C\[C@@H]1CC[C@@H](O)[C@@H](C1)OC5535.0Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 13-Demethyl tacrolimus GC-MS (Non-derivatized) - 70eV, Positivesplash10-0ab9-4000000900-9f1c5c8692fec78314ed2017-11-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 13-Demethyl tacrolimus GC-MS (TMS_1_1) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 13-Demethyl tacrolimus GC-MS (TMS_1_2) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 13-Demethyl tacrolimus GC-MS (TMS_1_3) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 13-Demethyl tacrolimus GC-MS (TMS_1_4) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 13-Demethyl tacrolimus GC-MS (TMS_1_5) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 13-Demethyl tacrolimus GC-MS (TMS_1_6) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-Demethyl tacrolimus 10V, Positive-QTOFsplash10-00dl-0100000900-b0dd302afe934b29bd612017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-Demethyl tacrolimus 20V, Positive-QTOFsplash10-0fdo-0300002900-7292d990b45443f037b32017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-Demethyl tacrolimus 40V, Positive-QTOFsplash10-0zfu-6300009800-8bfcbc11ae865eb29f302017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-Demethyl tacrolimus 10V, Negative-QTOFsplash10-000i-0000000900-0f920ee5ba647b2303062017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-Demethyl tacrolimus 20V, Negative-QTOFsplash10-00dr-0000000900-3610a673f8188d5a1cb62017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-Demethyl tacrolimus 40V, Negative-QTOFsplash10-00ec-1000000900-323c17d9bbccc278650b2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-Demethyl tacrolimus 10V, Positive-QTOFsplash10-0006-0000000900-3f8f2aa0d3710bc27def2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-Demethyl tacrolimus 20V, Positive-QTOFsplash10-0006-0000000900-fac2dbaf1ac64e705ead2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-Demethyl tacrolimus 40V, Positive-QTOFsplash10-01ot-6100001900-ae2ce668886db7948d2b2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-Demethyl tacrolimus 10V, Negative-QTOFsplash10-000i-0000000900-ea9dca48db3e442847982021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-Demethyl tacrolimus 20V, Negative-QTOFsplash10-000i-0000001900-2bad8a9db88d6380add72021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 13-Demethyl tacrolimus 40V, Negative-QTOFsplash10-0f7k-4400009700-22ea7cebe57c8107ac562021-10-12Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Membrane (predicted from logP)
Biospecimen Locations
  • Blood
  • Urine
Tissue Locations
  • Kidney
  • Liver
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodExpected but not QuantifiedNot QuantifiedNot AvailableNot AvailableNormal
      Not Available
details
UrineExpected but not QuantifiedNot QuantifiedNot AvailableNot AvailableNormal
      Not Available
details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID30778580
KEGG Compound IDC07649
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkFluorouracil
METLIN IDNot Available
PubChem Compound3385
PDB IDNot Available
ChEBI ID46345
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available