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Human Metabolome Database Version 3.5

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Showing metabocard for 1-(sn-Glycero-3-phospho)-1D-myo-inositol (HMDB11649)

Record Information
Version 3.5
Creation Date 2009-02-03 02:40:25 -0700
Update Date 2013-02-08 17:27:03 -0700
HMDB ID HMDB11649
Secondary Accession Numbers None
Metabolite Identification
Common Name 1-(sn-Glycero-3-phospho)-1D-myo-inositol
Description 1-(sn-Glycero-3-phospho)-1D-myo-inositol or glycerophosphoinositol is produced through deacylation by phospholipase B of the essential phospholipid phosphatidylinositol. Glycerophosphoinositols are ubiquitous phosphoinositide metabolites involved in the control of several cell functions. They exert their actions both intracellularly and by rapidly equilibrating across the plasma membrane. Their transport is mediated by the Glut2 transporter, the human ortholog of GIT1 (PMID: 17141226 Link_out). Glycerophosphoinositol is a substrate for glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) and is involved in the following reaction: 1-(sn-glycero-3-phospho)-1D-myo-inositol + H2O = glycerol + 1D-myo-inositol 1-phosphate. It is also a substrate for glycerophosphoinositol glycerophosphodiesterase (EC 3.1.4.44) which catalyzes the chemical reaction:. 1-(sn-glycero-3-phospho)-1D-myo-inositol + H2O = myo-inositol + sn-glycerol 3-phosphate.
Structure Thumb
Download: MOL | SDF | SMILES | InChI
Display: 2D Structure | 3D Structure
Synonyms
  1. 1-(Sn-glycero-3-Phospho)-1D-myo-inositol
  2. 3-Phosphoglyceroinositol
  3. Glyerophosphoinositol
  4. GroPIns
  5. Sn-glycero-3-Phospho-1-inositol
Chemical Formula C9H19O11P
Average Molecular Weight 334.2143
Monoisotopic Molecular Weight 334.066497962
IUPAC Name [(2R)-2,3-dihydroxypropoxy]({[(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl]oxy})phosphinic acid
Traditional IUPAC Name (2R)-2,3-dihydroxypropoxy[(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl]oxyphosphinic acid
CAS Registry Number Not Available
SMILES OC[C@@H](O)COP(O)(=O)O[C@H]1[C@H](O)[C@@H](O)[C@H](O)[C@@H](O)[C@H]1O
InChI Identifier InChI=1S/C9H19O11P/c10-1-3(11)2-19-21(17,18)20-9-7(15)5(13)4(12)6(14)8(9)16/h3-16H,1-2H2,(H,17,18)/t3-,4-,5-,6+,7-,8-,9-/m1/s1
InChI Key BMVUIWJCUQSHLZ-UJGXJMNGSA-N
Chemical Taxonomy
Kingdom Organic Compounds
Super Class Aliphatic Homomonocyclic Compounds
Class Cyclic Alcohols and Derivatives
Sub Class Cyclitols and Derivatives
Other Descriptors
  • Cyclic Alcohols and Derivatives
  • Organic Compounds
Substituents
  • 1,2 Diol
  • Cyclohexane
  • Monosaccharide Phosphate
  • Organic Hypophosphite
  • Organic Phosphite
  • Phosphoric Acid Ester
  • Primary Alcohol
  • Saccharide
  • Secondary Alcohol
  • Triose Monosaccharide
Direct Parent Inositol Phosphates
Ontology
Status Expected and Not Quantified
Origin
  • Endogenous
Biofunction Not Available
Application Not Available
Cellular locations Not Available
Physical Properties
State Solid
Experimental Properties
Property Value Reference
Melting Point Not Available Not Available
Boiling Point Not Available Not Available
Water Solubility Not Available Not Available
LogP Not Available Not Available
Predicted Properties
Property Value Source
Water Solubility 40.9 g/L ALOGPS
LogP -2.49 ALOGPS
LogP -4.8 ChemAxon
LogS -0.91 ALOGPS
pKa (strongest acidic) 1.83 ChemAxon
pKa (strongest basic) -3 ChemAxon
Hydrogen Acceptor Count 9 ChemAxon
Hydrogen Donor Count 8 ChemAxon
Polar Surface Area 197.37 A2 ChemAxon
Rotatable Bond Count 6 ChemAxon
Refractivity 63.38 ChemAxon
Polarizability 28.66 ChemAxon
Formal Charge 0 ChemAxon
Physiological Charge -1 ChemAxon
Spectra
Not Available
Biological Properties
Cellular Locations Not Available
Biofluid Locations Not Available
Tissue Location Not Available
Pathways Not Available
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease References None
Associated OMIM IDs None
DrugBank ID Not Available
Phenol Explorer Compound ID Not Available
Phenol Explorer Metabolite ID Not Available
FoodDB ID FDB011624
KNApSAcK ID Not Available
Chemspider ID 28184592 Link_out
KEGG Compound ID C01225 Link_out
BioCyc ID CPD-541 Link_out
BiGG ID Not Available
Wikipedia Link Not Available
NuGOwiki Link HMDB11649 Link_out
Metagene Link HMDB11649 Link_out
METLIN ID Not Available
PubChem Compound Not Available
PDB ID Not Available
ChEBI ID 18321 Link_out
References
Synthesis Reference Not Available
Material Safety Data Sheet (MSDS) Not Available
General References Not Available

Enzymes
Name: Glycerophosphodiester phosphodiesterase 1
Reactions:
  • 1-(sn-glycero-3-phospho)-1D-myo-inositol + H2O = myo-inositol + sn-glycerol 3-phosphate [RN:R01193]
Gene Name: GDE1
Uniprot ID: Q9NZC3 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Glycerophosphoinositol inositolphosphodiesterase GDPD2
Reactions:
  • 1-(sn-glycero-3-phospho)-1D-myo-inositol + H2O = glycerol + 1D-myo-inositol 1-phosphate [RN:R03331]
Gene Name: GDPD2
Uniprot ID: Q9HCC8 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA